RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 MED10Q9BTT4 135 aa8.28□□□□□ -1.08
CD44-211ENST00000442151 SCAND2PQ9GZW5 306 aaPredicted RBP8.28□□□□□ -1.08
CD44-211ENST00000442151 SLC39A2Q9NP94 309 aa8.28□□□□□ -1.08
CD44-211ENST00000442151 CFAP54Q96N23 3096 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 MAPK13O15264 365 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 STX10O60499 249 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 ALDH1A2O94788 518 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 PRAMEF12O95522 483 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 TDGF1P13385 188 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 KRT13P13646 458 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 FNTBP49356 437 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 SLC7A9P82251 487 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 CCINQ13939 588 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 RSPO4Q2I0M5 234 aaPredicted RBP8.27□□□□□ -1.09
CD44-211ENST00000442151 TADA2BQ86TJ2 420 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 UNC93AQ86WB7 457 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 OSTM1Q86WC4 334 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 GPIHBP1Q8IV16 184 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 TMEM130Q8N3G9 435 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 TTC8Q8TAM2 541 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 NETO1Q8TDF5 533 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 MYLPFQ96A32 169 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 FAXDC2Q96IV6 333 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 ZFYVE19Q96K21 471 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 SPATA32Q96LK8 384 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 TTLL2Q9BWV7 592 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 FBXO44Q9H4M3 255 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 EBF3Q9H4W6 596 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 ECT2Q9H8V3 914 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 DLL3Q9NYJ7 618 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 NXF1Q9UBU9 619 aaKnown RBP8.27□□□□□ -1.09
CD44-211ENST00000442151 HOOK1Q9UJC3 728 aaKnown RBP8.27□□□□□ -1.09
CD44-211ENST00000442151 PCDHGA5Q9Y5G8 931 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 PTPRZ1P23471 2315 aaPredicted RBP8.27□□□□□ -1.09
CD44-211ENST00000442151 NUP210Q8TEM1 1887 aaPredicted RBP8.27□□□□□ -1.09
CD44-211ENST00000442151 SCN1AP35498 2009 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 ANK1P16157 1881 aa8.27□□□□□ -1.09
CD44-211ENST00000442151 SHISA7A6NL88 538 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 RNF223E7ERA6 249 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 APBB3O95704 486 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 ABL1P00519 1130 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 CST3P01034 146 aaPredicted RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 CCDC192P0DO97 292 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 DPP6P42658 865 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 GALK1P51570 392 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 MRPS21P82921 87 aaKnown RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 EHHADHQ08426 723 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 ELF2Q15723 593 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 ZNF77Q15935 545 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 CSRP2Q16527 193 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 ZNF699Q32M78 642 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 MDH1BQ5I0G3 518 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 FOXD4L5Q5VV16 416 aaPredicted RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 BTBD8Q5XKL5 378 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 TMEM150AQ86TG1 271 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 ARL14EPQ8N8R7 260 aaPredicted RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 KCNV2Q8TDN2 545 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 SH3RF2Q8TEC5 729 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 GAB3Q8WWW8 586 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 FOXD4L4Q8WXT5 416 aaPredicted RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 PAGE5Q96GU1 130 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 PCED1BQ96HM7 432 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 LRRC3BQ96PB8 259 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 IKZF4Q9H2S9 585 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 FAM124BQ9H5Z6 455 aaPredicted RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 CYP3A43Q9HB55 503 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 GCNT4Q9P109 453 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 SERTAD1Q9UHV2 236 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 NCANO14594 1321 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 FANCMQ8IYD8 2048 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 PATJQ8NI35 1801 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 E2F8A0AVK6 867 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 RPP40O75818 363 aaKnown RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 ADH1CP00326 375 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 LMO2P25791 158 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 GJA4P35212 333 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 EIF2DP41214 584 aaKnown RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 SYKP43405 635 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 SOX9P48436 509 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 TUBP50607 506 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 CLDN10P78369 228 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 TNK2Q07912 1038 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 USP4Q13107 963 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 CUL4BQ13620 913 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 NCOA4Q13772 614 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 NFIL3Q16649 462 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 USP39Q53GS9 565 aaKnown RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 HECTD3Q5T447 861 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 LCE2CQ5TA81 110 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 SDHAF4Q5VUM1 108 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 LMBRD2Q68DH5 695 aaPredicted RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 INTS8Q75QN2 995 aaKnown RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 SYT13Q7L8C5 426 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 TRMT11Q7Z4G4 463 aaKnown RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 DCLK2Q8N568 766 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 C12orf50Q8NA57 414 aaPredicted RBP8.26□□□□□ -1.09
CD44-211ENST00000442151 B3GALNT2Q8NCR0 500 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 ZSWIM2Q8NEG5 633 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 PARD3BQ8TEW8 1205 aa8.26□□□□□ -1.09
CD44-211ENST00000442151 KBTBD7Q8WVZ9 684 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms