RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 PRPF31Q8WWY3 499 aaKnown RBP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 VPS11Q9H270 941 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 KANSL3Q9P2N6 904 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 MORF4L1Q9UBU8 362 aa17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 RPL26L1Q9UNX3 145 aaKnown RBP17.15■□□□□ 0.34
CLCNKA-203ENST00000439316 PCNTO95613 3336 aa17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 E7ENQ6 273 aa17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 HNRNPCL1O60812 293 aaKnown RBP17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 FARP2O94887 1054 aaPredicted RBP17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 CALB2P22676 271 aa17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 CTC1Q2NKJ3 1217 aa17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 PLEKHG4Q58EX7 1191 aa17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 UNC45BQ8IWX7 931 aa17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 KIRREL3Q8IZU9 778 aa17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 MPHOSPH6Q99547 160 aaKnown RBP17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 TCHPQ9BT92 498 aa17.14■□□□□ 0.33
CLCNKA-203ENST00000439316 APOC4-APOC2K7ER74 178 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 MED7O43513 233 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 APOC2P02655 101 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 CD48P09326 243 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 GM2AP17900 193 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 PTPN4P29074 926 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 EPHB2P29323 1055 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 PSMC1P62191 440 aaKnown RBP17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 TFAMQ00059 246 aaKnown RBP17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 RNASELQ05823 741 aaKnown RBP17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 SEPT7Q16181 437 aaKnown RBP17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 BBS9Q3SYG4 887 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 WASHC2DQ5SRD0 308 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 RGMBQ6NW40 437 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 CLNKQ7Z7G1 428 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 PDIK1LQ8N165 341 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 ENDOVQ8N8Q3 282 aaKnown RBP17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 SH3TC2Q8TF17 1288 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 STK32AQ8WU08 396 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 GPBP1L1Q9HC44 474 aaPredicted RBP17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 WDR35Q9P2L0 1181 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 SLC17A7Q9P2U7 560 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 XPO7Q9UIA9 1087 aaKnown RBP17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 NUMBLQ9Y6R0 609 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 DOCK3Q8IZD9 2030 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 PIAS1O75925 651 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 PRKCBP05771 671 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 DHRS4L1P0CG22 281 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 STAT5BP51692 787 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 FAM160B1Q5W0V3 765 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 XYLT1Q86Y38 959 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 PALM2Q8IXS6 379 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 CMASQ8NFW8 434 aaPredicted RBP17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 RFWD2Q8NHY2 731 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 METTL5Q9NRN9 209 aaKnown RBP17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 POLIQ9UNA4 740 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 PPME1Q9Y570 386 aa17.13■□□□□ 0.33
CLCNKA-203ENST00000439316 WDR91A4D1P6 747 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 TPBGLP0DKB5 382 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 CD19P15391 556 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 ANK1P16157 1881 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 ADORA2AP29274 412 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 NEK3P51956 506 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 EIF3EP60228 445 aaKnown RBP17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 IER5Q5VY09 327 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 MTDHQ86UE4 582 aaKnown RBP17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 CHSY1Q86X52 802 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 RFX6Q8HWS3 928 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 KCNV2Q8TDN2 545 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 CPXM1Q96SM3 734 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 CYTH2Q99418 400 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 BCO2Q9BYV7 579 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 MANSC1Q9H8J5 431 aa17.12■□□□□ 0.33
CLCNKA-203ENST00000439316 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 GOLGA8RI6L899 631 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 MCF2LO15068 1137 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 B4GALT4O60513 344 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 TNNC2P02585 160 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 ERBB2P04626 1255 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 PROZP22891 400 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 FAM110CQ1W6H9 321 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 ZBTB8OSQ8IWT0 167 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 TAB3Q8N5C8 712 aaPredicted RBP17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 EMC1Q8N766 993 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 FAM71DQ8N9W8 422 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 PTPRN2Q92932 1015 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 KLF6Q99612 283 aaPredicted RBP17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 CHMP2BQ9UQN3 213 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 IQANK1A0A1B0GTG1 560 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 MANSC4A6NHS7 340 aaPredicted RBP17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 LIN7AO14910 233 aaPredicted RBP17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 TGFB3P10600 412 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 MIPP30301 263 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 ETV4P43268 484 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 RAP1GAPP47736 663 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 RAD23BP54727 409 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 BASP1P80723 227 aaKnown RBP17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 LAMTOR4Q0VGL1 99 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 DPYSL3Q14195 570 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 LY6KQ17RY6 165 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 IGDCC3Q8IVU1 814 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 FBXO16Q8IX29 292 aaPredicted RBP17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 KCTD6Q8NC69 237 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 APOPT1Q96IL0 206 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms