RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TRIM60Q495X7 471 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 LRRC34Q8IZ02 419 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 CGRRF1Q99675 332 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 CARD9Q9H257 536 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 STIP1P31948 543 aaKnown RBP17.79■□□□□ 0.44
PTPRF-209ENST00000438120 TFDP3Q5H9I0 405 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 ATP8B4Q8TF62 1192 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 CEP41Q9BYV8 373 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 PPCSQ9HAB8 311 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 AGO4Q9HCK5 861 aaKnown RBP17.79■□□□□ 0.44
PTPRF-209ENST00000438120 SLC12A8A0AV02 714 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 LZTS3O60299 673 aaPredicted RBP17.78■□□□□ 0.44
PTPRF-209ENST00000438120 WDR47O94967 919 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 CDC16Q13042 620 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 NSL1Q96IY1 281 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 CNDP1Q96KN2 507 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 ECSITQ9BQ95 431 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 AKAP3O75969 853 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 SLC2A3P11169 496 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 MUTP22033 750 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 ERO1BQ86YB8 467 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 DDI1Q8WTU0 396 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 FAM129AQ9BZQ8 928 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 EVPLLA8MZ36 301 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 POMCP01189 267 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 IMPDH2P12268 514 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 KCNA3P22001 575 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 IRAK1P51617 712 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 OPTNQ96CV9 577 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 CISHQ9NSE2 258 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 TFE3P19532 575 aaPredicted RBP17.78■□□□□ 0.44
PTPRF-209ENST00000438120 FNTAP49354 379 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 SLC16A1P53985 500 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 HIST2H2ACQ16777 129 aaPredicted RBP17.78■□□□□ 0.44
PTPRF-209ENST00000438120 HIST2H2AA3Q6FI13 130 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 KAZALD1Q96I82 304 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 DNAJC7Q99615 494 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 GIMAP4Q9NUV9 329 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 SNTG2Q9NY99 539 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 PTPRUQ92729 1446 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 FICDQ9BVA6 458 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 USP18Q9UMW8 372 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 FZD1Q9UP38 647 aa17.78■□□□□ 0.44
PTPRF-209ENST00000438120 SMAPO00193 183 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 EPHX2P34913 555 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 NEK2P51955 445 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 OXCT1P55809 520 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 ZNF720Q7Z2F6 126 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 KCTD17Q8N5Z5 321 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 ZSWIM2Q8NEG5 633 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 CYP2W1Q8TAV3 490 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 ZKSCAN7Q9P0L1 754 aaPredicted RBP17.77■□□□□ 0.44
PTPRF-209ENST00000438120 AP4E1Q9UPM8 1137 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 THP07101 528 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 CYP24A1Q07973 514 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 POTEAQ6S8J7 498 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 OTOAQ7RTW8 1153 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 AAASQ9NRG9 546 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 PHTF1Q9UMS5 762 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 TMEM150BA6NC51 233 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 AKAP5P24588 427 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 CAPZA2P47755 286 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 TRPC1P48995 793 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 LAMTOR4Q0VGL1 99 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 SLC9A5Q14940 896 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 PTGISQ16647 500 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 MRNIPQ6NTE8 343 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 RIBC1Q8N443 379 aaPredicted RBP17.77■□□□□ 0.44
PTPRF-209ENST00000438120 VPS37AQ8NEZ2 397 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 VPS28Q9UK41 221 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 TMX2Q9Y320 296 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 UNC13BO14795 1591 aa17.77■□□□□ 0.44
PTPRF-209ENST00000438120 CCT8L1PA6NM43 557 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 ALOX15P16050 662 aaPredicted RBP17.77■□□□□ 0.43
PTPRF-209ENST00000438120 NCALDP61601 193 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 AGAP9Q5VTM2 703 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 PCNX4Q63HM2 1172 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 TMEM154Q6P9G4 183 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 CCDC81Q6ZN84 652 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 EDEM1Q92611 657 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 YME1L1Q96TA2 773 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 H7C4K7 107 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 ARHGEF9O43307 516 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 TMEM132BQ14DG7 1078 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 TTI2Q6NXR4 508 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 C4orf22Q6V702 233 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 ZNF571Q7Z3V5 609 aaPredicted RBP17.77■□□□□ 0.43
PTPRF-209ENST00000438120 TATDN2Q93075 761 aa17.77■□□□□ 0.43
PTPRF-209ENST00000438120 ADARB2Q9NS39 739 aaKnown RBP17.77■□□□□ 0.43
PTPRF-209ENST00000438120 CBX4O00257 560 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 JCHAINP01591 159 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 APOA1P02647 267 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 ACAT1P24752 427 aaKnown RBP17.76■□□□□ 0.43
PTPRF-209ENST00000438120 SKOR1P84550 965 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 LRRC6Q86X45 466 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 SYTL5Q8TDW5 730 aaPredicted RBP17.76■□□□□ 0.43
PTPRF-209ENST00000438120 MRPS31Q92665 395 aaKnown RBP17.76■□□□□ 0.43
PTPRF-209ENST00000438120 ILKAPQ9H0C8 392 aaPredicted RBP17.76■□□□□ 0.43
PTPRF-209ENST00000438120 TMEM176AQ96HP8 235 aa17.76■□□□□ 0.43
PTPRF-209ENST00000438120 C16orf96A6NNT2 1141 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms