RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 TRIM72Q6ZMU5 477 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 ACOT1Q86TX2 421 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 EXOC8Q8IYI6 725 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 UBR7Q8N806 425 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 GRK7Q8WTQ7 553 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 KIF12Q96FN5 646 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 HPDLQ96IR7 371 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 VCPIP1Q96JH7 1222 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 CFAP57Q96MR6 1250 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 RUNDC3BQ96NL0 473 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 TRIM56Q9BRZ2 755 aaKnown RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 NXF3Q9H4D5 531 aaKnown RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 CD248Q9HCU0 757 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 SLCO1B3Q9NPD5 702 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 CACNG4Q9UBN1 327 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 MICAL2O94851 1124 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 CALB1P05937 261 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 TRNP1Q6NT89 227 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 HIBCHQ6NVY1 386 aaPredicted RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 MICALCLQ6ZW33 695 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 RAET1EQ8TD07 263 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 NDRG1Q92597 394 aaKnown RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 EMID1Q96A84 441 aaPredicted RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 C18orf25Q96B23 403 aaPredicted RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 CNOT10Q9H9A5 744 aaKnown RBP9.93□□□□□ -0.82
CUX1-206ENST00000437600 TRIM33Q9UPN9 1127 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 TRIM17Q9Y577 477 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 HEY1Q9Y5J3 304 aa9.93□□□□□ -0.82
CUX1-206ENST00000437600 E5RJQ4 531 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 CTSHP09668 335 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 CYP3A5P20815 502 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 HOXA11P31270 313 aaPredicted RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 BASP1P80723 227 aaKnown RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 MFSD10Q14728 455 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 ZC3H12AQ5D1E8 599 aaKnown RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 CXCL17Q6UXB2 119 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 RFX6Q8HWS3 928 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 CCDC197Q8NCU1 140 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 ZMAT2Q96NC0 199 aaKnown RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 SNX9Q9Y5X1 595 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 A6NJR5 290 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 B4GALT4O60513 344 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 EIF4BP23588 611 aaKnown RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 GCAP28676 217 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 STX2P32856 288 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 CETN2P41208 172 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 SCTRP47872 440 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 PTPN11Q06124 597 aaPredicted RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 BBS9Q3SYG4 887 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 ANKRD20A8PQ5CZ79 823 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 PPP6R3Q5H9R7 873 aaPredicted RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 FAM47CQ5HY64 1035 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 GNASQ5JWF2 1037 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 PPP1R15BQ5SWA1 713 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 TAOK1Q7L7X3 1001 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 TBC1D1Q86TI0 1168 aaPredicted RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 XYLT1Q86Y38 959 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 KIF2BQ8N4N8 673 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 C3orf20Q8ND61 904 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 SLCO2A1Q92959 643 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 ACAP3Q96P50 834 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 PEBP4Q96S96 227 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 ADPGKQ9BRR6 497 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 TRIM6Q9C030 488 aaPredicted RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 RNF39Q9H2S5 420 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 GOLGA2P5Q9HBQ8 144 aa9.92□□□□□ -0.82
CUX1-206ENST00000437600 NGRNQ9NPE2 291 aaKnown RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 PIH1D1Q9NWS0 290 aaKnown RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 TPX2Q9ULW0 747 aaKnown RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 PIN4Q9Y237 131 aaKnown RBP9.92□□□□□ -0.82
CUX1-206ENST00000437600 SCN1AP35498 2009 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 C3orf70A6NLC5 250 aaPredicted RBP9.91□□□□□ -0.82
CUX1-206ENST00000437600 F2P00734 622 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 CYBAP13498 195 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 PDGFRAP16234 1089 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 KDELR1P24390 212 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 FOXN2P32314 431 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 CTCFP49711 727 aaPredicted RBP9.91□□□□□ -0.82
CUX1-206ENST00000437600 MYO1EQ12965 1108 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 DNAJC3Q13217 504 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 TMEM132DQ14C87 1099 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 ZNF618Q5T7W0 954 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 C3orf62Q6ZUJ4 267 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 ALLCQ8N6M5 410 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 CLEC4CQ8WTT0 213 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 CCT6BQ92526 530 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 TMEM176AQ96HP8 235 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 SAMD15Q9P1V8 674 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 TUBGCP4Q9UGJ1 667 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 SRRDQ9UH36 339 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 PPME1Q9Y570 386 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 SIP14410 1827 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 SYNJ2BP-COX16A0A087WUM0 186 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 A0A1B0GUA9 196 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 PAEPP09466 180 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 RPA3P35244 121 aaPredicted RBP9.91□□□□□ -0.82
CUX1-206ENST00000437600 CDH6P55285 790 aa9.91□□□□□ -0.82
CUX1-206ENST00000437600 WDR4P57081 412 aaKnown RBP9.91□□□□□ -0.82
CUX1-206ENST00000437600 SLC25A11Q02978 314 aaKnown RBP9.91□□□□□ -0.82
CUX1-206ENST00000437600 PIGHQ14442 188 aaPredicted RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms