RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 MTDHQ86UE4 582 aaKnown RBP12.34□□□□□ -0.43
CD44-209ENST00000433892 CCDC125Q86Z20 511 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 KIRREL3Q8IZU9 778 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 COPS5Q92905 334 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 MCRS1Q96EZ8 462 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 HEXIM2Q96MH2 286 aaKnown RBP12.34□□□□□ -0.43
CD44-209ENST00000433892 ASCC2Q9H1I8 757 aaPredicted RBP12.34□□□□□ -0.43
CD44-209ENST00000433892 PPME1Q9Y570 386 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 SOCS7O14512 581 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 CILPO75339 1184 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 LGR5O75473 907 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 GRAP2O75791 330 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 STAG3L1P0CL83 205 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 GPD2P43304 727 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 ROR1Q01973 937 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 CDO1Q16878 200 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 C15orf59Q2T9L4 293 aaPredicted RBP12.34□□□□□ -0.43
CD44-209ENST00000433892 ZC3H12AQ5D1E8 599 aaKnown RBP12.34□□□□□ -0.43
CD44-209ENST00000433892 FYB2Q5VWT5 728 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 NLRP9Q7RTR0 991 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 PLPPR4Q7Z2D5 763 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 RFWD2Q8NHY2 731 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 PTPRN2Q92932 1015 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 SLC7A6OSQ96CW6 309 aaPredicted RBP12.34□□□□□ -0.43
CD44-209ENST00000433892 CYTH2Q99418 400 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 TBC1D10AQ9BXI6 508 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 RSAD1Q9HA92 442 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 ASNSD1Q9NWL6 643 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.34□□□□□ -0.43
CD44-209ENST00000433892 NUMBLQ9Y6R0 609 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 TCRBV9S1A1TA0A576 114 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 KBTBD13C9JR72 458 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 TM9SF1O15321 606 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 IL18RAPO95256 599 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 MT-ND3P03897 115 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 ATP2A2P16615 1042 aaKnown RBP12.33□□□□□ -0.44
CD44-209ENST00000433892 CLNS1AP54105 237 aaKnown RBP12.33□□□□□ -0.44
CD44-209ENST00000433892 IGBP1P78318 339 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 PTK7Q13308 1070 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 PARP6Q2NL67 630 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 KBTBD12Q3ZCT8 623 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 MAP1SQ66K74 1059 aaPredicted RBP12.33□□□□□ -0.44
CD44-209ENST00000433892 TRNP1Q6NT89 227 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 C1orf228Q6PIY5 440 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 FBXO16Q8IX29 292 aaPredicted RBP12.33□□□□□ -0.44
CD44-209ENST00000433892 EXOC8Q8IYI6 725 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 RSRC1Q96IZ7 334 aaKnown RBP12.33□□□□□ -0.44
CD44-209ENST00000433892 PIWIL1Q96J94 861 aaKnown RBP12.33□□□□□ -0.44
CD44-209ENST00000433892 MANSC1Q9H8J5 431 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 TNFSF13BQ9Y275 285 aa12.33□□□□□ -0.44
CD44-209ENST00000433892 ANK1P16157 1881 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 H7C0C1 242 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 C2CD2LO14523 706 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 LPXNO60711 386 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 TROVE2P10155 538 aaKnown RBP eCLIP12.32□□□□□ -0.44
CD44-209ENST00000433892 EPHB2P29323 1055 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 GABRB2P47870 512 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 ATP5OP48047 213 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 GCLCP48506 637 aaPredicted RBP12.32□□□□□ -0.44
CD44-209ENST00000433892 ZNF143P52747 638 aaPredicted RBP12.32□□□□□ -0.44
CD44-209ENST00000433892 YWHAGP61981 247 aaKnown RBP eCLIP12.32□□□□□ -0.44
CD44-209ENST00000433892 FAAP100Q0VG06 881 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 NOMO1Q15155 1222 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 SLC45A4Q5BKX6 768 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 CYP4V2Q6ZWL3 525 aaPredicted RBP12.32□□□□□ -0.44
CD44-209ENST00000433892 LONP2Q86WA8 852 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 LRRC6Q86X45 466 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 AGGF1Q8N302 714 aaeCLIP12.32□□□□□ -0.44
CD44-209ENST00000433892 CXorf38Q8TB03 319 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 RXFP2Q8WXD0 754 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 SERAC1Q96JX3 654 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 FGD4Q96M96 766 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 KANSL3Q9P2N6 904 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 NKX1-2Q9UD57 310 aaPredicted RBP12.32□□□□□ -0.44
CD44-209ENST00000433892 ZFP69BQ9UJL9 534 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 IKBKGQ9Y6K9 419 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 A0A0G2JND7 137 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 E5RJQ4 531 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 MAP3K6O95382 1288 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 HMGCRP04035 888 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 PDGFRAP16234 1089 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 STIP1P31948 543 aaKnown RBP12.32□□□□□ -0.44
CD44-209ENST00000433892 PCK1P35558 622 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 ZNF200P98182 395 aaPredicted RBP12.32□□□□□ -0.44
CD44-209ENST00000433892 ACAP1Q15027 740 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 OR6B2Q6IFH4 312 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 CLNKQ7Z7G1 428 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 FAM13CQ8NE31 585 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 INPP5DQ92835 1189 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 ALKBH8Q96BT7 664 aaKnown RBP12.32□□□□□ -0.44
CD44-209ENST00000433892 FAF2Q96CS3 445 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 CPB2Q96IY4 423 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 CNPY3Q9BT09 278 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 VPS11Q9H270 941 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 RNPEPQ9H4A4 650 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 IFT122Q9HBG6 1241 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 RAB6BQ9NRW1 208 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 GPRC5DQ9NZD1 345 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 TEX264Q9Y6I9 313 aa12.32□□□□□ -0.44
CD44-209ENST00000433892 WDR90Q96KV7 1748 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms