RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 MYO1AQ9UBC5 1043 aa6.81□□□□□ -1.32
CCDC88A-206ENST00000430086 PHTF1Q9UMS5 762 aa6.81□□□□□ -1.32
CCDC88A-206ENST00000430086 GABRQQ9UN88 632 aa6.81□□□□□ -1.32
CCDC88A-206ENST00000430086 A0A1W2PPC4 97 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 RGS10O43665 173 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 PLIN1O60240 522 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 PIAS2O75928 621 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 TJP3O95049 919 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 MYL3P08590 195 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 ITPKBP27987 946 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 EPHA3P29320 983 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 LY6KQ17RY6 165 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 STRIP1Q5VSL9 837 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 SLC9A4Q6AI14 798 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 KRT28Q7Z3Y7 464 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 FAM98AQ8NCA5 519 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 SVIPQ8NHG7 77 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 R3HDM4Q96D70 268 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 ZNF668Q96K58 619 aaPredicted RBP6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 HAPLN3Q96S86 360 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 C17orf80Q9BSJ5 609 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 ZNF700Q9H0M5 742 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 RIOX1Q9H6W3 641 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 SEMA4GQ9NTN9 838 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 DLL3Q9NYJ7 618 aa6.8□□□□□ -1.32
CCDC88A-206ENST00000430086 RASA4BC9J798 803 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 RASA4O43374 803 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 NUDT3O95989 172 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 EBLN1P0CF75 366 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 NDUFB7P17568 137 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 FGFR2P21802 821 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 UQCRC1P31930 480 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 CCT8P50990 548 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 NEK3P51956 506 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 TIAL1Q01085 375 aaKnown RBP eCLIP6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 SMN1Q16637 294 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 LONRF1Q17RB8 773 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 KLHDC7AQ5VTJ3 777 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 CATSPERGQ6ZRH7 1159 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 PARS2Q7L3T8 475 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 BEND5Q7L4P6 421 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 LIX1LQ8IVB5 337 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 CCDC33Q8N5R6 958 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 BRI3BPQ8WY22 251 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 KLK15Q9H2R5 256 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 PRDM13Q9H4Q3 707 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 TBC1D23Q9NUY8 699 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 ST3GAL5Q9UNP4 418 aa6.79□□□□□ -1.32
CCDC88A-206ENST00000430086 APOL1O14791 398 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 PRKCBP05771 671 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 FAM163BP0C2L3 166 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 DRD4P21917 467 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 ITGA8P53708 1063 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 FAM153CQ494X1 144 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 AARS2Q5JTZ9 985 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 MZT2AQ6P582 158 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 MTHFD1LQ6UB35 978 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 CAND1Q86VP6 1230 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 PRIMA1Q86XR5 153 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 PARD3BQ8TEW8 1205 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 XAGE5Q8WWM1 108 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 TBC1D5Q92609 795 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 ZG16BQ96DA0 208 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 BBC3Q96PG8 261 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 MYD88Q99836 296 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 IL17RBQ9NRM6 502 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 DUSP22Q9NRW4 184 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 C11orf21Q9P2W6 132 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 USP22Q9UPT9 525 aa6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 DRG1Q9Y295 367 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-206ENST00000430086 FER1L4A9Z1Z3 1794 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 CCDC194A0A1B0GVG4 234 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 H0YIZ8 118 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 DLDP09622 509 aaKnown RBP6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 TNFSF4P23510 183 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 CYP2C18P33260 490 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 PDE1AP54750 535 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 ELLP55199 621 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 TPTEP56180 551 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 TIRAPP58753 221 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 TSTD2Q5T7W7 516 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 Q6ZWC4 215 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 RAB11FIP4Q86YS3 637 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 RASAL3Q86YV0 1011 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 LRRC71Q8N4P6 559 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 OR2C3Q8N628 320 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 SARAFQ96BY9 339 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 ZDHHC12Q96GR4 267 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 CCDC138Q96M89 665 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 RIPOR3Q96MK2 946 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 VN1R3Q9BXE9 311 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 INO80BQ9C086 356 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 TRIM36Q9NQ86 728 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 HEYLQ9NQ87 328 aaPredicted RBP6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 CHST12Q9NRB3 414 aa6.77□□□□□ -1.33
CCDC88A-206ENST00000430086 A0A087WZ62 844 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 KCNQ3O43525 872 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 PROP1O75360 226 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 C1QL1O75973 258 aa6.76□□□□□ -1.33
CCDC88A-206ENST00000430086 FGF18O76093 207 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms