RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 ZIK1Q3SY52 487 aaPredicted RBP5.95□□□□□ -1.46
LINC01040-201ENST00000425048 TMEM240Q5SV17 173 aa5.95□□□□□ -1.46
LINC01040-201ENST00000425048 TMEM63BQ5T3F8 832 aa5.95□□□□□ -1.46
LINC01040-201ENST00000425048 DPY19L3Q6ZPD9 716 aa5.95□□□□□ -1.46
LINC01040-201ENST00000425048 MEPCEQ7L2J0 689 aaKnown RBP5.95□□□□□ -1.46
LINC01040-201ENST00000425048 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.95□□□□□ -1.46
LINC01040-201ENST00000425048 OSR1Q8TAX0 266 aaPredicted RBP5.95□□□□□ -1.46
LINC01040-201ENST00000425048 HSPBAP1Q96EW2 488 aa5.95□□□□□ -1.46
LINC01040-201ENST00000425048 SMAD5Q99717 465 aaKnown RBP5.95□□□□□ -1.46
LINC01040-201ENST00000425048 POT1Q9NUX5 634 aa5.95□□□□□ -1.46
LINC01040-201ENST00000425048 CPA4Q9UI42 421 aa5.95□□□□□ -1.46
LINC01040-201ENST00000425048 SNX14Q9Y5W7 946 aa5.95□□□□□ -1.46
LINC01040-201ENST00000425048 PRR23D1E9PI22 279 aaPredicted RBP5.94□□□□□ -1.46
LINC01040-201ENST00000425048 CES2O00748 559 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 VNN1O95497 513 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 PRR23D2P0DMB1 279 aaPredicted RBP5.94□□□□□ -1.46
LINC01040-201ENST00000425048 GKP32189 559 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 PRKAG1P54619 331 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 SUMO2P61956 95 aaKnown RBP5.94□□□□□ -1.46
LINC01040-201ENST00000425048 AMPD3Q01432 767 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 ZNF91Q05481 1191 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 LEXMQ3ZCV2 418 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.94□□□□□ -1.46
LINC01040-201ENST00000425048 GAS2L3Q86XJ1 694 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 RAB11FIP4Q86YS3 637 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 CELF5Q8N6W0 485 aaKnown RBP5.94□□□□□ -1.46
LINC01040-201ENST00000425048 PPP2R3CQ969Q6 453 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 C17orf80Q9BSJ5 609 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 ARMT1Q9H993 441 aa5.94□□□□□ -1.46
LINC01040-201ENST00000425048 PMPCBO75439 489 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 ALPLP05186 524 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 VCAM1P19320 739 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 PSG6Q00889 435 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 SLC15A4Q8N697 577 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 DNAJC5GQ8N7S2 189 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 PNISRQ8TF01 805 aaKnown RBP5.93□□□□□ -1.46
LINC01040-201ENST00000425048 MAP4K1Q92918 833 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 LYZL4Q96KX0 146 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 ASPSCR1Q9BZE9 553 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 PIH1D1Q9NWS0 290 aaKnown RBP5.93□□□□□ -1.46
LINC01040-201ENST00000425048 ZSCAN32Q9NX65 697 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 STXBP5LQ9Y2K9 1186 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 ZMYM2Q9UBW7 1377 aa5.93□□□□□ -1.46
LINC01040-201ENST00000425048 TLR2O60603 784 aa5.92□□□□□ -1.46
LINC01040-201ENST00000425048 THBS3P49746 956 aa5.92□□□□□ -1.46
LINC01040-201ENST00000425048 COPB1P53618 953 aaKnown RBP5.92□□□□□ -1.46
LINC01040-201ENST00000425048 KRTAP5-11Q6L8G4 156 aa5.92□□□□□ -1.46
LINC01040-201ENST00000425048 DEF8Q6ZN54 512 aa5.92□□□□□ -1.46
LINC01040-201ENST00000425048 PIM3Q86V86 326 aa5.92□□□□□ -1.46
LINC01040-201ENST00000425048 LIX1LQ8IVB5 337 aa5.92□□□□□ -1.46
LINC01040-201ENST00000425048 MAP3K14Q99558 947 aa5.92□□□□□ -1.46
LINC01040-201ENST00000425048 H3BNX3 289 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 ALDH2P05091 517 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 ME1P48163 572 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 ID2Q02363 134 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 FGL2Q14314 439 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 MLC1Q15049 377 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 PLA1AQ53H76 456 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 DENND2CQ68D51 928 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 LMBRD2Q68DH5 695 aaPredicted RBP5.91□□□□□ -1.46
LINC01040-201ENST00000425048 ANO7Q6IWH7 933 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 TMEM65Q6PI78 240 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 C9orf47Q6ZRZ4 202 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 PIP4P1Q86T03 277 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 BPIFB1Q8TDL5 484 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 TMEM171Q8WVE6 324 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 MRGPRX1Q96LB2 322 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 CGRRF1Q99675 332 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 GBA2Q9HCG7 927 aaPredicted RBP5.91□□□□□ -1.46
LINC01040-201ENST00000425048 TMEM184CQ9NVA4 438 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 LUC7L2Q9Y383 392 aaKnown RBP5.91□□□□□ -1.46
LINC01040-201ENST00000425048 SQORQ9Y6N5 450 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 SBNO2Q9Y2G9 1366 aa5.91□□□□□ -1.46
LINC01040-201ENST00000425048 A0A087WWL8 130 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 M0R3H8 397 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 CRYABP02511 175 aaKnown RBP5.9□□□□□ -1.46
LINC01040-201ENST00000425048 SRSF1Q07955 248 aaKnown RBP eCLIP5.9□□□□□ -1.46
LINC01040-201ENST00000425048 LMAN2Q12907 356 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 CCNIQ14094 377 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 PTCHD4Q6ZW05 846 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 SMRP1Q8NCR6 262 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 ACRBPQ8NEB7 543 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 PLBD2Q8NHP8 589 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 HPS3Q969F9 1004 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 C1GALT1C1Q96EU7 318 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 P2RX7Q99572 595 aaKnown RBP5.9□□□□□ -1.46
LINC01040-201ENST00000425048 HEY2Q9UBP5 337 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 USP22Q9UPT9 525 aa5.9□□□□□ -1.46
LINC01040-201ENST00000425048 FER1L4A9Z1Z3 1794 aa5.9□□□□□ -1.47
LINC01040-201ENST00000425048 A0A088AWK7 358 aa5.89□□□□□ -1.47
LINC01040-201ENST00000425048 FAM90A8PA6NJQ4 464 aa5.89□□□□□ -1.47
LINC01040-201ENST00000425048 FAM90A13PP0C7W8 464 aa5.89□□□□□ -1.47
LINC01040-201ENST00000425048 FAM90A24PP0C7X0 464 aa5.89□□□□□ -1.47
LINC01040-201ENST00000425048 CYP19A1P11511 503 aaPredicted RBP5.89□□□□□ -1.47
LINC01040-201ENST00000425048 PRKAR1BP31321 381 aa5.89□□□□□ -1.47
LINC01040-201ENST00000425048 SEMA3AQ14563 771 aa5.89□□□□□ -1.47
LINC01040-201ENST00000425048 CERCAMQ5T4B2 595 aa5.89□□□□□ -1.47
LINC01040-201ENST00000425048 TMTC4Q5T4D3 741 aa5.89□□□□□ -1.47
LINC01040-201ENST00000425048 RANBP10Q6VN20 620 aa5.89□□□□□ -1.47
LINC01040-201ENST00000425048 GRAMD1CQ8IYS0 662 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms