RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 ZNF233A6NK53 670 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 KHNYNO15037 678 aaKnown RBP8.64□□□□□ -1.03
VIM-202ENST00000421459 TGFB1I1O43294 461 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 ADAM23O75077 832 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 TNNC2P02585 160 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 PROS1P07225 676 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 DLATP10515 647 aaKnown RBP8.64□□□□□ -1.03
VIM-202ENST00000421459 HOXB3P14651 431 aaPredicted RBP8.64□□□□□ -1.03
VIM-202ENST00000421459 TCF3P15923 654 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 PTPN1P18031 435 aaKnown RBP8.64□□□□□ -1.03
VIM-202ENST00000421459 SYT1P21579 422 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 ANXA13P27216 316 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 GNL1P36915 607 aaPredicted RBP8.64□□□□□ -1.03
VIM-202ENST00000421459 WASP42768 502 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 MAPK8P45983 427 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 CASP4P49662 377 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 PGFP49763 221 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 CDH8P55286 799 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 SLC7A9P82251 487 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 CUL4AQ13619 759 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 DUOXA2Q1HG44 320 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 VSTM1Q6UX27 236 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 UNQ6494/PRO21346Q6UXR6 183 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 C4orf50Q6ZRC1 276 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 DPH6Q7L8W6 267 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 CYP2U1Q7Z449 544 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 NELFCDQ8IXH7 590 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 OR6B3Q8NGW1 331 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 OLIG1Q8TAK6 271 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 HMGB4Q8WW32 186 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 CCDC127Q96BQ5 260 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 CNOT6LQ96LI5 555 aaKnown RBP8.64□□□□□ -1.03
VIM-202ENST00000421459 KCNK16Q96T55 309 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 TTLL2Q9BWV7 592 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 GZF1Q9H116 711 aaPredicted RBP8.64□□□□□ -1.03
VIM-202ENST00000421459 SNX25Q9H3E2 840 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 TMEM9BQ9NQ34 198 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 HCN2Q9UL51 889 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 ZMIZ1Q9ULJ6 1067 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 ATG2BQ96BY7 2078 aa8.64□□□□□ -1.03
VIM-202ENST00000421459 TPRP12270 2363 aaKnown RBP8.64□□□□□ -1.03
VIM-202ENST00000421459 MAP1BP46821 2468 aaKnown RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 AKAP13Q12802 2813 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 LAMA5O15230 3695 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 EML5Q05BV3 1969 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 COCHO43405 550 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 KAT7O95251 611 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 OAS1P00973 400 aaKnown RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 IRF1P10914 325 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 MBL2P11226 248 aaPredicted RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 TXLNAP40222 546 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 P2RY2P41231 377 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 KIR2DL1P43626 348 aaPredicted RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 CYP2J2P51589 502 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 MYL6P60660 151 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 NOP14P78316 857 aaKnown RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 ORC1Q13415 861 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 SLC39A14Q15043 492 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 LY6G5CQ5SRR4 150 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 DAB2IPQ5VWQ8 1189 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 TDRD10Q5VZ19 366 aaKnown RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 CCDC73Q6ZRK6 1079 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 MIB1Q86YT6 1006 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 WDR49Q8IV35 697 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 CCDC65Q8IXS2 484 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 OR2I1PQ8NGU4 316 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 SCAMP5Q8TAC9 235 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 SPATA18Q8TC71 538 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 PLEKHO2Q8TD55 490 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 EXOC4Q96A65 974 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 ZFRQ96KR1 1074 aaKnown RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 C8orf48Q96LL4 319 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 PNKPQ96T60 521 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 SCNM1Q9BWG6 230 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 TMEM121BQ9BXQ6 578 aaPredicted RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 TRIM9Q9C026 710 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 SDCBP2Q9H190 292 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 CCSER2Q9H7U1 834 aa8.63□□□□□ -1.03
VIM-202ENST00000421459 TFIP11Q9UBB9 837 aaKnown RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 NXF1Q9UBU9 619 aaKnown RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 R3HCC1Q9Y3T6 440 aaKnown RBP8.63□□□□□ -1.03
VIM-202ENST00000421459 OBSL1O75147 1896 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 SPAARA0A1B0GVQ0 90 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 TCRBV21S2A2A0A5A6 115 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 A8MXQ7 604 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 TRIM66O15016 1216 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 MAP3K13O43283 966 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 HYAL3O43820 417 aaPredicted RBP8.62□□□□□ -1.03
VIM-202ENST00000421459 TACC1O75410 805 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 BEST1O76090 585 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 OLFM2O95897 454 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 ADH5P11766 374 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 ENGP17813 658 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 TNNI1P19237 187 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 ITPKAP23677 461 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 FAM193AP78312 1265 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 MRPS21P82921 87 aaKnown RBP8.62□□□□□ -1.03
VIM-202ENST00000421459 ALCAMQ13740 583 aa8.62□□□□□ -1.03
VIM-202ENST00000421459 E2F4Q16254 413 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms