RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 PPP5CP53041 499 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 IL13RA1P78552 427 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 KHDRBS1Q07666 443 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS13A-207ENST00000419472 DCTN2Q13561 401 aaKnown RBP5.58□□□□□ -1.52
VPS13A-207ENST00000419472 ACVR2BQ13705 512 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 SCARB2Q14108 478 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 TBC1D10BQ4KMP7 808 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-207ENST00000419472 FAM69AQ5T7M9 428 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 DCP2Q8IU60 420 aaKnown RBP5.58□□□□□ -1.52
VPS13A-207ENST00000419472 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-207ENST00000419472 XPO4Q9C0E2 1151 aaKnown RBP5.58□□□□□ -1.52
VPS13A-207ENST00000419472 AP5M1Q9H0R1 490 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 MST1RQ04912 1400 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 A0A087WWL8 130 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 VWA3AA6NCI4 1184 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 CEACAM5P06731 702 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 CSH1P0DML2 217 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 CSH2P0DML3 217 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 CD83Q01151 205 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 MMRN1Q13201 1228 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 CYP27C1Q4G0S4 372 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 C1orf141Q5JVX7 400 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 KANK2Q63ZY3 851 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 ARL6IP4Q66PJ3 421 aaKnown RBP5.58□□□□□ -1.52
VPS13A-207ENST00000419472 ARHGAP27Q6ZUM4 889 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 DENND5BQ6ZUT9 1274 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 BMP8AQ7Z5Y6 402 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 CNTROBQ8N137 903 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 PPP1R14CQ8TAE6 165 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 BCL7CQ8WUZ0 217 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-207ENST00000419472 WFDC12Q8WWY7 111 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 SPSB4Q96A44 273 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 APOPT1Q96IL0 206 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 BRD8Q9H0E9 1235 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 TP63Q9H3D4 680 aaPredicted RBP5.58□□□□□ -1.52
VPS13A-207ENST00000419472 SLC45A2Q9UMX9 530 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 DTNAQ9Y4J8 743 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 ADGRB1O14514 1584 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 IRS2Q9Y4H2 1338 aa5.58□□□□□ -1.52
VPS13A-207ENST00000419472 COL22A1Q8NFW1 1626 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 A0A1W2PQJ5 194 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 SLC7A4O43246 635 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 ALDH1A3P47895 512 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 ALDH18A1P54886 795 aaKnown RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 HABP2Q14520 560 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 TMEM266Q2M3C6 531 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 CC2D1BQ5T0F9 858 aaKnown RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 FAM180AQ6UWF9 173 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 KRT28Q7Z3Y7 464 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 ANKS1BQ7Z6G8 1248 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 RAB11FIP4Q86YS3 637 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 DIS3L2Q8IYB7 885 aaKnown RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 BCL6BQ8N143 479 aaPredicted RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 MFSD14AQ96MC6 490 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 MRPL9Q9BYD2 267 aaKnown RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 G6PC2Q9NQR9 355 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 FSCN3Q9NQT6 498 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 MRPS18AQ9NVS2 196 aaKnown RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 NXF1Q9UBU9 619 aaKnown RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 SNX8Q9Y5X2 465 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 EIF3AQ14152 1382 aaKnown RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 GRM6O15303 877 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 CUTAO60888 179 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 HARS2P49590 506 aaKnown RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 NFIAQ12857 509 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 FCRL6Q6DN72 434 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 LINC00114Q6XXX2 140 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 LIPIQ6XZB0 460 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 PROSER1Q86XN7 944 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 ASB11Q8WXH4 323 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 USP6NLQ92738 828 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 AGAP1Q9UPQ3 857 aa5.57□□□□□ -1.52
VPS13A-207ENST00000419472 YTHDC2Q9H6S0 1430 aaKnown RBP5.57□□□□□ -1.52
VPS13A-207ENST00000419472 MBD3L4A6NDZ8 208 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 MBD3L3A6NE82 208 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 NOTOA8MTQ0 251 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 PTGES3LE9PB15 166 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 MTSS1O43312 755 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 CELA2BP08218 269 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 PSMC1P62191 440 aaKnown RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 FSTL1Q12841 308 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 RPS6KA2Q15349 733 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 GALNTL6Q49A17 601 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 TTC22Q5TAA0 569 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 TMPRSS7Q7RTY8 843 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 OR7D4Q8NG98 312 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 MYCBPQ99417 103 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 MS4A7Q9GZW8 240 aaPredicted RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 OR10A4Q9H209 315 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 ARHGAP20Q9P2F6 1191 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 DERAQ9Y315 318 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 TAF6LQ9Y6J9 622 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 ITSN1Q15811 1721 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 PITPNM2Q9BZ72 1349 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 ZC3H12DA2A288 527 aaKnown RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 ZNF839A8K0R7 811 aa5.56□□□□□ -1.52
VPS13A-207ENST00000419472 GTPBP1O00178 669 aaKnown RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 RTCAO00442 366 aaKnown RBP5.56□□□□□ -1.52
VPS13A-207ENST00000419472 KLK10O43240 276 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms