RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 CNKSR2Q8WXI2 1034 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 KHSRPQ92945 711 aaKnown RBP eCLIP10.32□□□□□ -0.763e-7■■■■□ 20.1
SS18-203ENST00000415083 RSRC1Q96IZ7 334 aaKnown RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 ACAD9Q9H845 621 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 DDX56Q9NY93 547 aaKnown RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 KIF1CO43896 1103 aaKnown RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 CSDE1O75534 798 aaKnown RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 TOM1L1O75674 476 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 MAP3K6O95382 1288 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 NFICP08651 508 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 SRGAP2CP0DJJ0 459 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 SERPINB3P29508 390 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 HSDL1Q3SXM5 330 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 BBS9Q3SYG4 887 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 SPDYAQ5MJ70 313 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 ALYREFQ86V81 257 aaKnown RBP10.32□□□□□ -0.76
SS18-203ENST00000415083 KBTBD2Q8IY47 623 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 PQLC3Q8N755 202 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 SLC44A1Q8WWI5 657 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 MCRS1Q96EZ8 462 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 WRNIP1Q96S55 665 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 LHX5Q9H2C1 402 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 HEY2Q9UBP5 337 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 PLXNA1Q9UIW2 1896 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 ZFP69BQ9UJL9 534 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 EFR3BQ9Y2G0 817 aa10.32□□□□□ -0.76
SS18-203ENST00000415083 FAM237BA0A1B0GVD1 139 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 H0YCG3 227 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 PYGBP11216 843 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 TFE3P19532 575 aaPredicted RBP10.31□□□□□ -0.76
SS18-203ENST00000415083 PTPN4P29074 926 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 GPD2P43304 727 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 GABRB2P47870 512 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 CBLBQ13191 982 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 CA9Q16790 459 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 ZFYVE27Q5T4F4 411 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 MICALL2Q8IY33 904 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 NAF1Q96HR8 494 aaKnown RBP10.31□□□□□ -0.76
SS18-203ENST00000415083 FAM111AQ96PZ2 611 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 TEX13BQ9BXU2 312 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 PHACTR1Q9C0D0 580 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 ZNF518BQ9C0D4 1074 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 MANSC1Q9H8J5 431 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 GINM1Q9NU53 330 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 SENP1Q9P0U3 644 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 NR2E3Q9Y5X4 410 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 GPR25O00155 361 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 CYB561D2O14569 222 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 GSC2O15499 205 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 CXCL8P10145 99 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 MARK3P27448 753 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 RXRBP28702 533 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 TCF7P36402 384 aaPredicted RBP10.31□□□□□ -0.76
SS18-203ENST00000415083 ARL4CP56559 192 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 PSMC1P62191 440 aaKnown RBP10.31□□□□□ -0.76
SS18-203ENST00000415083 YWHAZP63104 245 aaKnown RBP10.31□□□□□ -0.76
SS18-203ENST00000415083 TFAMQ00059 246 aaKnown RBP10.31□□□□□ -0.76
SS18-203ENST00000415083 SGSM1Q2NKQ1 1148 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 HHATQ5VTY9 493 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 SLC7A3Q8WY07 619 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 HSPH1Q92598 858 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 TMEM120AQ9BXJ8 343 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 TAS2R1Q9NYW7 299 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 NXF1Q9UBU9 619 aaKnown RBP10.31□□□□□ -0.76
SS18-203ENST00000415083 STRIP2Q9ULQ0 834 aa10.31□□□□□ -0.76
SS18-203ENST00000415083 CAPN14A8MX76 684 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 APOC4-APOC2K7ER74 178 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 OGTO15294 1046 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 RFPL1O75677 317 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 DCTN3O75935 186 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 KRT36O76013 467 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 MICAL2O94851 1124 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 APOC2P02655 101 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 GMPSP49915 693 aaPredicted RBP10.3□□□□□ -0.76
SS18-203ENST00000415083 TEX44Q53QW1 395 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 FAXCQ5TGI0 409 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 ZC3H18Q86VM9 953 aaKnown RBP10.3□□□□□ -0.76
SS18-203ENST00000415083 MPP5Q8N3R9 675 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 PLD5Q8N7P1 536 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.3□□□□□ -0.76
SS18-203ENST00000415083 ATP11CQ8NB49 1132 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 MICAL1Q8TDZ2 1067 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 FNIP1Q8TF40 1166 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 SPDL1Q96EA4 605 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 NUDCD1Q96RS6 583 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 SYT15Q9BQS2 421 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 VPS11Q9H270 941 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 POPDC2Q9HBU9 364 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 ARMCX1Q9P291 453 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 SPDYE5A6NIY4 337 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 DKC1O60832 514 aaKnown RBP eCLIP10.3□□□□□ -0.76
SS18-203ENST00000415083 DNAJC6O75061 913 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 CHRM1P11229 460 aaPredicted RBP10.3□□□□□ -0.76
SS18-203ENST00000415083 EIF3EP60228 445 aaKnown RBP10.3□□□□□ -0.76
SS18-203ENST00000415083 LACTBP83111 547 aaPredicted RBP10.3□□□□□ -0.76
SS18-203ENST00000415083 ATP11AP98196 1134 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 NOMO1Q15155 1222 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 DUOXA2Q1HG44 320 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 ZNF699Q32M78 642 aa10.3□□□□□ -0.76
SS18-203ENST00000415083 EEPD1Q7L9B9 569 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms