RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SGK1O00141 431 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 DDX39AO00148 427 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 MAP3K7O43318 606 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 GAS2O43903 313 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 PEX1O43933 1283 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 ATP9AO75110 1047 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 ZNF189O75820 626 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 RTN3O95197 1032 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 ESRRAP11474 423 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 KRT10P13645 584 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 ALOX15P16050 662 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TNNI1P19237 187 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 PRDX6P30041 224 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 CRHR1P34998 444 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SERPINB9P50453 376 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 INHBEP58166 350 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 RPS6P62753 249 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SARNPP82979 210 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 OTUD4Q01804 1114 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 NCOA4Q13772 614 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 RCN1Q15293 331 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC5A9Q2M3M2 681 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 MSS51Q4VC12 460 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 RSBN1LQ6PCB5 846 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 MAEAQ7L5Y9 396 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SCYL3Q8IZE3 742 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 WDTC1Q8N5D0 677 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 STKLD1Q8NE28 680 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 ACTL9Q8TC94 416 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 MCUR1Q96AQ8 359 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 C8orf37Q96NL8 207 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TAAR1Q96RJ0 339 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 HAPLN3Q96S86 360 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 PAIP2Q9BPZ3 127 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 CCDC106Q9BWC9 280 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 BCO2Q9BYV7 579 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 NIF3L1Q9GZT8 377 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 VRTNQ9H8Y1 702 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 DMAP1Q9NPF5 467 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 KRT82Q9NSB4 513 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 RBAKQ9NYW8 714 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 NDUFA13Q9P0J0 144 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TAGLN3Q9UI15 199 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TANC1Q9C0D5 1861 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 BRCA1P38398 1863 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 TCRBV9S1A1TA0A576 114 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SPATA31C2B4DYI2 1134 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 FCHO1O14526 889 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 CAPN9O14815 690 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 CASQ2O14958 399 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 LRCH4O75427 683 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 KRT37O76014 449 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 TMEM63AO94886 807 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 CFHP08603 1231 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SNRPAP09012 282 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 ZSCAN5DPP0CG00 497 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 CCDC130P13994 396 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SERPINB3P29508 390 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SSTR1P30872 391 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 RAB27AP51159 221 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 EFNA5P52803 228 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 NLRP11P59045 1033 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 CREB5Q02930 508 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 PTK7Q13308 1070 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 TFDP2Q14188 446 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 DPYSL3Q14195 570 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 C6orf163Q5TEZ5 329 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 RFWD3Q6PCD5 774 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 RINLQ6ZS11 566 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 PALM2Q8IXS6 379 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 EXOC8Q8IYI6 725 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 KIRREL3Q8IZU9 778 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 REPS2Q8NFH8 660 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SPDYE1Q8NFV5 336 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 STMN2Q93045 179 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 PPP2R3CQ969Q6 453 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 MCRS1Q96EZ8 462 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 RMDN3Q96TC7 470 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 TMEM121Q9BTD3 319 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 HAPLN2Q9GZV7 340 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 POLR3FQ9H1D9 316 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 VCX3BQ9H321 246 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 ETAA1Q9NY74 926 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 PAK5Q9P286 719 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC17A7Q9P2U7 560 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 BCLAF3A2AJT9 711 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 YDJCA8MPS7 323 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 F8VP50 259 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 IRF6O14896 467 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 CCNT2O60583 730 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 STK10O94804 968 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 SUPT20HL2P0C7V6 817 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 ETS1P14921 441 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 ATF7P17544 494 aaPredicted RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 TGM2P21980 687 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 ACAT1P24752 427 aaKnown RBP5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 WNT7BP56706 349 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 AP2B1P63010 937 aa5.98□□□□□ -1.45
CCDC88A-203ENST00000412148 IRX4P78413 519 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms