RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 SPATA4Q8NEY3 305 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 ACSF2Q96CM8 615 aaPredicted RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 HSFY1Q96LI6 401 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 CFAP57Q96MR6 1250 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 RHOXF2Q9BQY4 288 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 CARD9Q9H257 536 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 RBM12Q9NTZ6 932 aaKnown RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 TMEM59LQ9UK28 342 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 PGRMC1O00264 195 aaKnown RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 CES2O00748 559 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 CYP2F1P24903 491 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 MAN1A1P33908 653 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 MRPS25P82663 173 aaKnown RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 IFRD2Q12894 506 aaPredicted RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 MAPRE1Q15691 268 aaKnown RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 LONRF2Q1L5Z9 754 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 ATP13A4Q4VNC1 1196 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 RAB6CQ53S08 254 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 PRSS55Q6UWB4 352 aaPredicted RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 RSRC2Q7L4I2 434 aaKnown RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 CCDC50Q8IVM0 306 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 FAM149B1Q96BN6 582 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 ZNF689Q96CS4 500 aaPredicted RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 ZCWPW1Q9H0M4 648 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 RAB6CQ9H0N0 254 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 ZWILCHQ9H900 591 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 RNF14Q9UBS8 474 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 PCSK1NQ9UHG2 260 aa13.08□□□□□ -0.32
CHMP3-204ENST00000409727 MRPL42Q9Y6G3 142 aaKnown RBP13.08□□□□□ -0.32
CHMP3-204ENST00000409727 COL4A6Q14031 1691 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 VWA8A3KMH1 1905 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 ALPK3Q96L96 1907 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 C2CD4BA6NLJ0 364 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 C2CD2LO14523 706 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 EFCAB14O75071 495 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 BAIAP3O94812 1187 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 FGBP02675 491 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 FGFR3P22607 806 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 GRIK1P39086 918 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 RPL34P49207 117 aaKnown RBP13.07□□□□□ -0.32
CHMP3-204ENST00000409727 ZNF143P52747 638 aaPredicted RBP13.07□□□□□ -0.32
CHMP3-204ENST00000409727 EPHB4P54760 987 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 ELAVL2Q12926 359 aaKnown RBP13.07□□□□□ -0.32
CHMP3-204ENST00000409727 PPIGQ13427 754 aaKnown RBP eCLIP13.07□□□□□ -0.327e-11■■□□□ 12.6
CHMP3-204ENST00000409727 SMTNL2Q2TAL5 461 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 SEL1L2Q5TEA6 688 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 TXNRD3NBQ6F5E7 133 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 ZNF280DQ6N043 979 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 KCNT2Q6UVM3 1135 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 C4orf50Q6ZRC1 276 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 ZDHHC17Q8IUH5 632 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 SCN4BQ8IWT1 228 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 DCP1BQ8IZD4 617 aaKnown RBP13.07□□□□□ -0.32
CHMP3-204ENST00000409727 ARFGAP1Q8N6T3 406 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 ACTRT1Q8TDG2 376 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 KCTD13Q8WZ19 329 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 KHSRPQ92945 711 aaKnown RBP eCLIP13.07□□□□□ -0.325e-6■■■■□ 19.6
CHMP3-204ENST00000409727 TTPALQ9BTX7 342 aa13.07□□□□□ -0.32
CHMP3-204ENST00000409727 ZMYND8Q9ULU4 1186 aaPredicted RBP13.07□□□□□ -0.32
CHMP3-204ENST00000409727 PI4K2BG5E9Z4 385 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 KRIT1O00522 736 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 PSTPIP1O43586 416 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 LRCH4O75427 683 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 USP17L7P0C7H9 530 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 CPB1P15086 417 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 SDC4P31431 198 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 MRPS5P82675 430 aaKnown RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 ADCY1Q08828 1119 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 SMC1AQ14683 1233 aaKnown RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 CCDC14Q49A88 953 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 KLHL7Q8IXQ5 586 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 RASGEF1CQ8N431 466 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 NIPA2Q8N8Q9 360 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 STKLD1Q8NE28 680 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 FNIP1Q8TF40 1166 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 IGSF21Q96ID5 467 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 ULBP1Q9BZM6 244 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 PLEKHA4Q9H4M7 779 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 NGRNQ9NPE2 291 aaKnown RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 DMAP1Q9NPF5 467 aaPredicted RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 CYLDQ9NQC7 956 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 CXXC1Q9P0U4 656 aaPredicted RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 LCMT1Q9UIC8 334 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 HHLA1C9JL84 531 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 RNF8O76064 485 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 KRT1P04264 644 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 RPL17P18621 184 aaKnown RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 TFE3P19532 575 aaPredicted RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 KCTD19Q17RG1 926 aaPredicted RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 ODF2Q5BJF6 829 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 KCNT1Q5JUK3 1230 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 SDHAF4Q5VUM1 108 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 KIAA1841Q6NSI8 718 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 RSPO2Q6UXX9 243 aaPredicted RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 ZNF572Q7Z3I7 529 aaPredicted RBP13.06□□□□□ -0.32
CHMP3-204ENST00000409727 TTC9BQ8N6N2 239 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 ATAD1Q8NBU5 361 aa13.06□□□□□ -0.32
CHMP3-204ENST00000409727 RIN2Q8WYP3 895 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms