RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 CGNQ9P2M7 1197 aaKnown RBP30.4■■■□□ 2.46
HMGB1-205ENST00000399494 ARHGAP26Q9UNA1 814 aa30.4■■■□□ 2.46
HMGB1-205ENST00000399494 CLIC2O15247 247 aa30.39■■■□□ 2.46
HMGB1-205ENST00000399494 TGFB1I1O43294 461 aa30.39■■■□□ 2.46
HMGB1-205ENST00000399494 PDGFRBP09619 1106 aa30.39■■■□□ 2.46
HMGB1-205ENST00000399494 WARSP23381 471 aaKnown RBP30.39■■■□□ 2.46
HMGB1-205ENST00000399494 MPLP40238 635 aa30.39■■■□□ 2.46
HMGB1-205ENST00000399494 KCNB1Q14721 858 aa30.39■■■□□ 2.46
HMGB1-205ENST00000399494 STPG1Q5TH74 334 aa30.39■■■□□ 2.46
HMGB1-205ENST00000399494 CEP295NLQ96MC4 621 aa30.39■■■□□ 2.46
HMGB1-205ENST00000399494 DCLK1O15075 740 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 SMC2O95347 1197 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 APBB3O95704 486 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 GRIK1P39086 918 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 CYP2J2P51589 502 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 USP46P62068 366 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 MAPRE1Q15691 268 aaKnown RBP30.38■■■□□ 2.45
HMGB1-205ENST00000399494 ACDQ96AP0 544 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 KIAA1586Q9HCI6 787 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 VPS45Q9NRW7 570 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 RMND1Q9NWS8 449 aa30.38■■■□□ 2.45
HMGB1-205ENST00000399494 PFKLP17858 780 aa30.37■■■□□ 2.45
HMGB1-205ENST00000399494 UBE2HP62256 183 aa30.37■■■□□ 2.45
HMGB1-205ENST00000399494 N4BP2L1Q5TBK1 243 aaPredicted RBP30.37■■■□□ 2.45
HMGB1-205ENST00000399494 DENND5BQ6ZUT9 1274 aa30.37■■■□□ 2.45
HMGB1-205ENST00000399494 GOLGA5Q8TBA6 731 aa30.37■■■□□ 2.45
HMGB1-205ENST00000399494 TRPM5Q9NZQ8 1165 aa30.37■■■□□ 2.45
HMGB1-205ENST00000399494 CST3P01034 146 aaPredicted RBP30.36■■■□□ 2.45
HMGB1-205ENST00000399494 KCNA4P22459 653 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 OPRD1P41143 372 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 PDE6CP51160 858 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 CYP27A1Q02318 531 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 TRAPPC11Q7Z392 1133 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 WDR49Q8IV35 697 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 MYCBPAPQ8TBZ2 947 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 SMARCE1Q969G3 411 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 MMS19Q96T76 1030 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 TTLL2Q9BWV7 592 aa30.36■■■□□ 2.45
HMGB1-205ENST00000399494 K7EQS6 105 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 LEFTY2O00292 366 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 RHOBTB1O94844 696 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 NFATC1O95644 943 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 ELF2Q15723 593 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 GAB4Q2WGN9 574 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 XXYLT1Q8NBI6 393 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 CCDC26Q8TAB7 109 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 USP33Q8TEY7 942 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 PCED1BQ96HM7 432 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 RNF38Q9H0F5 515 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 NME7Q9Y5B8 376 aa30.35■■■□□ 2.45
HMGB1-205ENST00000399494 CHD8Q9HCK8 2581 aa30.34■■■□□ 2.45
HMGB1-205ENST00000399494 GNL1P36915 607 aaPredicted RBP30.34■■■□□ 2.45
HMGB1-205ENST00000399494 DGKEP52429 567 aa30.34■■■□□ 2.45
HMGB1-205ENST00000399494 ST3GAL2Q16842 350 aa30.34■■■□□ 2.45
HMGB1-205ENST00000399494 ADGRG2Q8IZP9 1017 aa30.34■■■□□ 2.45
HMGB1-205ENST00000399494 RDH13Q8NBN7 331 aa30.34■■■□□ 2.45
HMGB1-205ENST00000399494 GSDMAQ96QA5 445 aa30.34■■■□□ 2.45
HMGB1-205ENST00000399494 MRPL45Q9BRJ2 306 aaKnown RBP30.34■■■□□ 2.45
HMGB1-205ENST00000399494 LSM14BQ9BX40 385 aaKnown RBP30.34■■■□□ 2.45
HMGB1-205ENST00000399494 MAPK8IP1Q9UQF2 711 aa30.34■■■□□ 2.45
HMGB1-205ENST00000399494 MYO16Q9Y6X6 1858 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 CNOT1A5YKK6 2376 aaKnown RBP30.33■■■□□ 2.45
HMGB1-205ENST00000399494 ZNF840PA6NDX5 716 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 ANTXRLA6NF34 631 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 FAM163BP0C2L3 166 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 ANXA13P27216 316 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 PMLP29590 882 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 NOP14P78316 857 aaKnown RBP30.33■■■□□ 2.45
HMGB1-205ENST00000399494 SLC7A9P82251 487 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 SNRNP35Q16560 246 aaKnown RBP30.33■■■□□ 2.45
HMGB1-205ENST00000399494 TCEAL6Q6IPX3 200 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 ERCC4Q92889 916 aaPredicted RBP30.33■■■□□ 2.45
HMGB1-205ENST00000399494 TCEAL3Q969E4 200 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 C8orf48Q96LL4 319 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 KIAA1549LQ6ZVL6 1849 aa30.33■■■□□ 2.45
HMGB1-205ENST00000399494 BCLAF3A2AJT9 711 aaKnown RBP30.32■■■□□ 2.44
HMGB1-205ENST00000399494 TRIM66O15016 1216 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 TACC1O75410 805 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 PPP3CCP48454 512 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 MDH1BQ5I0G3 518 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 C12orf56Q8IXR9 622 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 KIAA1958Q8N8K9 716 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 TSTD1Q8NFU3 115 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 SNX25Q9H3E2 840 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 KCTD10Q9H3F6 313 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 EHD2Q9NZN4 543 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 INVSQ9Y283 1065 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 PCDHA5Q9Y5H7 936 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 LAMA1P25391 3075 aa30.32■■■□□ 2.44
HMGB1-205ENST00000399494 F8VP50 259 aa30.31■■■□□ 2.44
HMGB1-205ENST00000399494 PDXKO00764 312 aa30.31■■■□□ 2.44
HMGB1-205ENST00000399494 CALUO43852 315 aaPredicted RBP30.31■■■□□ 2.44
HMGB1-205ENST00000399494 EXOC3O60645 756 aa30.31■■■□□ 2.44
HMGB1-205ENST00000399494 CAVIN2O95810 425 aa30.31■■■□□ 2.44
HMGB1-205ENST00000399494 CREB5Q02930 508 aa30.31■■■□□ 2.44
HMGB1-205ENST00000399494 C2orf27AQ580R0 203 aa30.31■■■□□ 2.44
HMGB1-205ENST00000399494 ELOA2Q8IYF1 753 aaPredicted RBP30.31■■■□□ 2.44
HMGB1-205ENST00000399494 ANGPTL2Q9UKU9 493 aa30.31■■■□□ 2.44
HMGB1-205ENST00000399494 HELZP42694 1942 aaKnown RBP30.31■■■□□ 2.44
HMGB1-205ENST00000399494 KCNK5O95279 499 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms