RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 XYLT1Q86Y38 959 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 NIM1KQ8IY84 436 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 TMEM130Q8N3G9 435 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 WDR60Q8WVS4 1066 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 ZNF333Q96JL9 665 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 CALN1Q9BXU9 219 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 SIP14410 1827 aa13.27□□□□□ -0.29
SHMT1-205ENST00000395684 IGKV6D-21A0A0A0MT36 114 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 HOXC6P09630 235 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 MYL2P10916 166 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 OAZ1P54368 228 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 HMGCS2P54868 508 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 CDH8P55286 799 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 ZC3H18Q86VM9 953 aaKnown RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 ARMC2Q8NEN0 867 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 ACO2Q99798 780 aaKnown RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 SYT15Q9BQS2 421 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 TUBB6Q9BUF5 446 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 LHX5Q9H2C1 402 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 STOML1Q9UBI4 398 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 CPSF3Q9UKF6 684 aaKnown RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 IKBKGQ9Y6K9 419 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 SMAPO00193 183 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 ABLIM1O14639 778 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 MCF2LO15068 1137 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 C1QAP02745 245 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 INHBAP08476 426 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 NEFHP12036 1026 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 SERPINB4P48594 390 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 YWHAGP61981 247 aaKnown RBP eCLIP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 MUM1Q2TAK8 710 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 HSF5Q4G112 596 aaPredicted RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 RAB6CQ53S08 254 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 NBPF12Q5TAG4 269 aaPredicted RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 SNX30Q5VWJ9 437 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 LMNTD2Q8IXW0 634 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 FAM136AQ96C01 138 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 YIPF3Q9GZM5 350 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 RAB6CQ9H0N0 254 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 ACAD9Q9H845 621 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 ARMCX1Q9P291 453 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 USP18Q9UMW8 372 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 FZD1Q9UP38 647 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 COL11A1P12107 1806 aaPredicted RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 OGTO15294 1046 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 NVLO15381 856 aaKnown RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 TBX10O75333 385 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 TRUB2O95900 331 aaKnown RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 SRGAP2CP0DJJ0 459 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 CNTN2Q02246 1040 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 KCNJ11Q14654 390 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 KRT72Q14CN4 511 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 TSNAXIP1Q2TAA8 658 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 SH3PXD2AQ5TCZ1 1133 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 ALYREFQ86V81 257 aaKnown RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 SCYL3Q8IZE3 742 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 VPS52Q8N1B4 723 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 OXNAD1Q96HP4 312 aaPredicted RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 PEBP4Q96S96 227 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 TEX13BQ9BXU2 312 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 MRPL4Q9BYD3 311 aaKnown RBP13.26□□□□□ -0.29
SHMT1-205ENST00000395684 NMUR2Q9GZQ4 415 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 ARHGEF4Q9NR80 690 aa13.26□□□□□ -0.29
SHMT1-205ENST00000395684 PARP14Q460N5 1801 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 FCHO1O14526 889 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 ESRRAP11474 423 aaPredicted RBP13.25□□□□□ -0.29
SHMT1-205ENST00000395684 VHLP40337 213 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 RFC5P40937 340 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 OSTNP61366 133 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 STXBP2Q15833 593 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 CCDC6Q16204 474 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 DARS2Q6PI48 645 aaKnown RBP13.25□□□□□ -0.29
SHMT1-205ENST00000395684 ZNF280CQ8ND82 737 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 MCUR1Q96AQ8 359 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 SRPK1Q96SB4 655 aaKnown RBP13.25□□□□□ -0.29
SHMT1-205ENST00000395684 MECRQ9BV79 373 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 SYNCQ9H7C4 482 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 RLFQ13129 1914 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 SPDYE5A6NIY4 337 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 CXorf49A8MYA2 514 aaPredicted RBP13.25□□□□□ -0.29
SHMT1-205ENST00000395684 CAPN9O14815 690 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 RARBP10826 455 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 STIP1P31948 543 aaKnown RBP13.25□□□□□ -0.29
SHMT1-205ENST00000395684 ICAM3P32942 547 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 GCLCP48506 637 aaPredicted RBP13.25□□□□□ -0.29
SHMT1-205ENST00000395684 MRPS35P82673 323 aaKnown RBP13.25□□□□□ -0.29
SHMT1-205ENST00000395684 TNFAIP1Q13829 316 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 CES4AQ5XG92 561 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 CDR2LQ86X02 465 aaPredicted RBP13.25□□□□□ -0.29
SHMT1-205ENST00000395684 CEP120Q8N960 986 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 DTX3LQ8TDB6 740 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 ZNF483Q8TF39 744 aaPredicted RBP13.25□□□□□ -0.29
SHMT1-205ENST00000395684 TWNKQ96RR1 684 aa13.25□□□□□ -0.29
SHMT1-205ENST00000395684 ENO4A6NNW6 628 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 TRIM49D1C9J1S8 452 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 PPP1R12AO14974 1030 aaPredicted RBP13.24□□□□□ -0.29
SHMT1-205ENST00000395684 MAP3K13O43283 966 aa13.24□□□□□ -0.29
SHMT1-205ENST00000395684 MAFO75444 373 aaPredicted RBP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms