RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 VPS16Q9H269 839 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 FBXO44Q9H4M3 255 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 C11orf16Q9NQ32 467 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 ZNF840PA6NDX5 716 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 SMTNL1A8MU46 457 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 O00370 1275 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 PFKLP17858 780 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 PSMC3P17980 439 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 SLC8A3P57103 927 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 APBA1Q02410 837 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 KCNMA1Q12791 1236 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 GOLGA7BQ2TAP0 167 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 VITQ6UXI7 678 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 TTC30AQ86WT1 665 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 DHX40Q8IX18 779 aaKnown RBP22.95■■□□□ 1.26
CLN3-207ENST00000395653 FBXO32Q969P5 355 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 ASIC4Q96FT7 647 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 UBXN6Q9BZV1 441 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 HESX1Q9UBX0 185 aa22.95■■□□□ 1.26
CLN3-207ENST00000395653 LRRC10BA6NIK2 292 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 HEPACAM2A8MVW5 462 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 PRAMEF12O95522 483 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 KRT5P13647 590 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 CDK11BP21127 795 aaKnown RBP22.94■■□□□ 1.26
CLN3-207ENST00000395653 PDE6CP51160 858 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 COPB1P53618 953 aaKnown RBP22.94■■□□□ 1.26
CLN3-207ENST00000395653 BCAT1P54687 386 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 STILQ15468 1287 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 ZSCAN23Q3MJ62 389 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 TMEM31Q5JXX7 168 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 DPY19L2P1Q6NXN4 242 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 MFSD6LQ8IWD5 586 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 RSPRY1Q96DX4 576 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 ZNF638Q14966 1978 aaKnown RBP22.94■■□□□ 1.26
CLN3-207ENST00000395653 TECTAO75443 2155 aa22.94■■□□□ 1.26
CLN3-207ENST00000395653 TRAV19A0A0A6YYK7 116 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 TMEM221A6NGB7 291 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 M0R296 226 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 DPYSL4O14531 572 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 GPC5P78333 572 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 ZNF268Q14587 947 aaPredicted RBP22.93■■□□□ 1.26
CLN3-207ENST00000395653 CNGA2Q16280 664 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 ARHGAP44Q17R89 818 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 FKBP15Q5T1M5 1219 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 LCLAT1Q6UWP7 414 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 GPRIN1Q7Z2K8 1008 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 TFAP2BQ92481 460 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 SHC3Q92529 594 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 TRMT61BQ9BVS5 477 aaKnown RBP22.93■■□□□ 1.26
CLN3-207ENST00000395653 KIF9Q9HAQ2 790 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 TRPC7Q9HCX4 862 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 WNT16Q9UBV4 365 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 MYH10P35580 1976 aa22.93■■□□□ 1.26
CLN3-207ENST00000395653 C2orf78A6NCI8 922 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 PRR33A8MZF0 331 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 CFHP08603 1231 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 USP17L7P0C7H9 530 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 ZDHHC11BP0C7U3 371 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 RFX1P22670 979 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 KIF11P52732 1056 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 PFKPQ01813 784 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 FCHO2Q0JRZ9 810 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 BST2Q10589 180 aaKnown RBP22.92■■□□□ 1.26
CLN3-207ENST00000395653 SNX30Q5VWJ9 437 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 PIGZQ86VD9 579 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 CELF5Q8N6W0 485 aaKnown RBP22.92■■□□□ 1.26
CLN3-207ENST00000395653 TDP1Q9NUW8 608 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 DNAJC12Q9UKB3 198 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 WDR3Q9UNX4 943 aaKnown RBP eCLIP22.92■■□□□ 1.26
CLN3-207ENST00000395653 ANAPC1Q9H1A4 1944 aa22.92■■□□□ 1.26
CLN3-207ENST00000395653 FAM86C2PA6NEL3 165 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 XPO1O14980 1071 aaKnown RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 CAVIN2O95810 425 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 CKMP06732 381 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 SETSIPP0DME0 302 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 BRD2P25440 801 aaKnown RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 PDE4CQ08493 712 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 GRM2Q14416 872 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 IQCB1Q15051 598 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 PKDCCQ504Y2 493 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 APTXQ7Z2E3 356 aaKnown RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 BMP8AQ7Z5Y6 402 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 USP13Q92995 863 aaPredicted RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 ZSWIM1Q9BR11 485 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 SMG9Q9H0W8 520 aaKnown RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 PLCB1Q9NQ66 1216 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 AJAP1Q9UKB5 411 aaPredicted RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 FBXL21Q9UKT6 434 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 SCML2Q9UQR0 700 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 USP3Q9Y6I4 520 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 LGALS16A8MUM7 142 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 BECN2A8MW95 431 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 OLFM2O95897 454 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 OAS1P00973 400 aaKnown RBP22.91■■□□□ 1.26
CLN3-207ENST00000395653 ATP1A3P13637 1013 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 HDCP19113 662 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 NFKBIBQ15653 356 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 RAB41Q5JT25 222 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 KLHDC7AQ5VTJ3 777 aa22.91■■□□□ 1.26
CLN3-207ENST00000395653 GPIHBP1Q8IV16 184 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms