RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 NEMP1O14524 444 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 HNRNPCL1O60812 293 aaKnown RBP16.8■□□□□ 0.28
PCDH1-203ENST00000394536 LYPLA2O95372 231 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 GPD1P21695 349 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 CUL3Q13618 768 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 MAP7D1Q3KQU3 841 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 C16orf46Q6P387 395 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 DCLK2Q8N568 766 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 NETO2Q8NC67 525 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 KIF12Q96FN5 646 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 MEI4A8MW99 385 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 ABHD2P08910 425 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 DPEP1P16444 411 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 ARL1P40616 181 aaPredicted RBP16.8■□□□□ 0.28
PCDH1-203ENST00000394536 TAF5Q15542 800 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 ZMYND8Q9ULU4 1186 aaPredicted RBP16.8■□□□□ 0.28
PCDH1-203ENST00000394536 TELO2Q9Y4R8 837 aa16.8■□□□□ 0.28
PCDH1-203ENST00000394536 ATP8B3O60423 1300 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 BCORQ6W2J9 1755 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 GNAT1P11488 350 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 RPL10AP62906 217 aaKnown RBP16.79■□□□□ 0.28
PCDH1-203ENST00000394536 NBPF20Q3BBV1 942 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 TTC7BQ86TV6 843 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 ALYREFQ86V81 257 aaKnown RBP16.79■□□□□ 0.28
PCDH1-203ENST00000394536 INPP5DQ92835 1189 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 OXNAD1Q96HP4 312 aaPredicted RBP16.79■□□□□ 0.28
PCDH1-203ENST00000394536 WNK4Q96J92 1243 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 TJP2Q9UDY2 1190 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 COL14A1Q05707 1796 aaKnown RBP16.79■□□□□ 0.28
PCDH1-203ENST00000394536 TM9SF1O15321 606 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 ATP9BO43861 1147 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 IVDP26440 423 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 KHDC1Q4VXA5 237 aaKnown RBP16.79■□□□□ 0.28
PCDH1-203ENST00000394536 DSTYKQ6XUX3 929 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 PID1Q7Z2X4 250 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 KLHL8Q9P2G9 620 aaPredicted RBP16.79■□□□□ 0.28
PCDH1-203ENST00000394536 LGALS13Q9UHV8 139 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 HACL1Q9UJ83 578 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.79■□□□□ 0.28
PCDH1-203ENST00000394536 NPM3O75607 178 aaKnown RBP16.79■□□□□ 0.28
PCDH1-203ENST00000394536 RBL1P28749 1068 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 LY6KQ17RY6 165 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 WASHC2DQ5SRD0 308 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 EFCAB12Q6NXP0 572 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 RFWD3Q6PCD5 774 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 CPT1BQ92523 772 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 PGBD4Q96DM1 585 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 HPDLQ96IR7 371 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 ZNF570Q96NI8 536 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 LRMDAQ9H2I8 198 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 ST6GALNAC4Q9H4F1 302 aa16.79■□□□□ 0.28
PCDH1-203ENST00000394536 ADCY3O60266 1144 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 CYP1A1P04798 512 aaPredicted RBP16.78■□□□□ 0.28
PCDH1-203ENST00000394536 GARSP41250 739 aaKnown RBP16.78■□□□□ 0.28
PCDH1-203ENST00000394536 IRX1P78414 480 aaPredicted RBP16.78■□□□□ 0.28
PCDH1-203ENST00000394536 CRADDP78560 199 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 PTPN11Q06124 597 aaPredicted RBP16.78■□□□□ 0.28
PCDH1-203ENST00000394536 TMEM62Q0P6H9 643 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 SCUBE1Q8IWY4 988 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 PORCNQ9H237 461 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 DRG1Q9Y295 367 aaKnown RBP16.78■□□□□ 0.28
PCDH1-203ENST00000394536 TCRBV9S1A1TA0A576 114 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 PGK2P07205 417 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 KCNA4P22459 653 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 NME3Q13232 169 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 TRIP10Q15642 601 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 Q3C1V9 767 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 PTPN20Q4JDL3 420 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 ANGEL2Q5VTE6 544 aaKnown RBP16.78■□□□□ 0.28
PCDH1-203ENST00000394536 XRRA1Q6P2D8 792 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 A8MXQ7 604 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 LSM8O95777 96 aaKnown RBP16.78■□□□□ 0.28
PCDH1-203ENST00000394536 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.78■□□□□ 0.28
PCDH1-203ENST00000394536 FAM83AQ86UY5 434 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 WDR49Q8IV35 697 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 BRSK2Q8IWQ3 736 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 TFAP2BQ92481 460 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 ACSS3Q9H6R3 686 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 ZNF408Q9H9D4 720 aa16.78■□□□□ 0.28
PCDH1-203ENST00000394536 C2CD2LO14523 706 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 VNN1O95497 513 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 CDKN2BP42772 138 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 CCNHP51946 323 aaPredicted RBP16.77■□□□□ 0.28
PCDH1-203ENST00000394536 LAMTOR4Q0VGL1 99 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 BST1Q10588 318 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 MXD4Q14582 209 aaPredicted RBP16.77■□□□□ 0.28
PCDH1-203ENST00000394536 RNASEH2BQ5TBB1 312 aaKnown RBP16.77■□□□□ 0.28
PCDH1-203ENST00000394536 RHBDF2Q6PJF5 856 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 CES3Q6UWW8 571 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 IZUMO2Q6UXV1 221 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 ACOT1Q86TX2 421 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 SCUBE3Q8IX30 993 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 FAM167AQ96KS9 214 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 ZNF518BQ9C0D4 1074 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 A0A0B4J269 797 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 ITGAVP06756 1048 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 CDK16Q00536 496 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 LRRC74BQ6ZQY2 392 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 FAM172AQ8WUF8 416 aa16.77■□□□□ 0.28
PCDH1-203ENST00000394536 CLPTM1LQ96KA5 538 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms