RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 B3GALT6Q96L58 329 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 SELENOOQ9BVL4 669 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 THAP2Q9H0W7 228 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 VIPAS39Q9H9C1 493 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 APOBEC3GQ9HC16 384 aaKnown RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 ZDHHC7Q9NXF8 308 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 DMGDHQ9UI17 866 aaKnown RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 NOCTQ9UK39 431 aaKnown RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 TIMM13Q9Y5L4 95 aaPredicted RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 HCFC2Q9Y5Z7 792 aa10.77□□□□□ -0.69
VPS53-202ENST00000389040 PDCD11Q14690 1871 aaKnown RBP10.77□□□□□ -0.69
VPS53-202ENST00000389040 ANK1P16157 1881 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 NLRC5Q86WI3 1866 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 CYP26A1O43174 497 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 TGM5O43548 720 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 BUB1BO60566 1050 aaPredicted RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 HNRNPA1P09651 372 aaKnown RBP eCLIP10.76□□□□□ -0.69
VPS53-202ENST00000389040 MYBL2P10244 700 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 TNFRSF8P28908 595 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 TNNT3P45378 269 aaPredicted RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 MRPS25P82663 173 aaKnown RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 ROR1Q01973 937 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 INTS6LQ5JSJ4 861 aaKnown RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 C4orf50Q6ZRC1 276 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 ADGRD2Q7Z7M1 963 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 SLC47A2Q86VL8 602 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 GSPT2Q8IYD1 628 aaKnown RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 AUTS2Q8WXX7 1259 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 HLA-CQ95604 372 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 HES6Q96HZ4 224 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 FAM84AQ96KN4 292 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 CALR3Q96L12 384 aaKnown RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 PI4K2AQ9BTU6 479 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 NT5C1AQ9BXI3 368 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 ISCUQ9H1K1 167 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 ACBD3Q9H3P7 528 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 AMFRQ9UKV5 643 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 SZT2Q5T011 3432 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 CDH23Q9H251 3354 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 A8MXQ7 604 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 CLSTN1O94985 981 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 FTLP02792 175 aaPredicted RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 CPB1P15086 417 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 CHRNB2P17787 502 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 HADHBP55084 474 aaKnown RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 RNASE9P60153 205 aaKnown RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 SLC7A5Q01650 507 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 PLD1Q13393 1074 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 TCEAL1Q15170 157 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 TERF2Q15554 542 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 AAK1Q2M2I8 961 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 LIN9Q5TKA1 542 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 TAF3Q5VWG9 929 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 SCARA3Q6AZY7 606 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 RBM23Q86U06 439 aaKnown RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 RHOT2Q8IXI1 618 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 TMEM130Q8N3G9 435 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 KREMEN2Q8NCW0 462 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 MAFAQ8NHW3 353 aaPredicted RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 MYCBPAPQ8TBZ2 947 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 AENQ8WTP8 325 aaKnown RBP10.76□□□□□ -0.69
VPS53-202ENST00000389040 RTP3Q9BQQ7 232 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 TMEM59LQ9UK28 342 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 FBXW11Q9UKB1 542 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 CNTN6Q9UQ52 1028 aa10.76□□□□□ -0.69
VPS53-202ENST00000389040 KIAA1671Q9BY89 1806 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 WDR27A2RRH5 827 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 H3BQF6 201 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 PGRMC1O00264 195 aaKnown RBP10.75□□□□□ -0.69
VPS53-202ENST00000389040 PER2O15055 1255 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 POLR3GO15318 223 aaPredicted RBP10.75□□□□□ -0.69
VPS53-202ENST00000389040 CEP104O60308 925 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 RTN2O75298 545 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 CILPO75339 1184 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 PAEPP09466 180 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 GZMAP12544 262 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 CYP11B1P15538 503 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 PTPN1P18031 435 aaKnown RBP10.75□□□□□ -0.69
VPS53-202ENST00000389040 PDE6CP51160 858 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 VSTM1Q6UX27 236 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 RSPO2Q6UXX9 243 aaPredicted RBP10.75□□□□□ -0.69
VPS53-202ENST00000389040 B3GALNT2Q8NCR0 500 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 OR10T2Q8NGX3 314 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 PCDHB18PQ96TA0 734 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 KRT12Q99456 494 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 PKMYT1Q99640 499 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 HINFPQ9BQA5 517 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 SYT15Q9BQS2 421 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 MRPL45Q9BRJ2 306 aaKnown RBP10.75□□□□□ -0.69
VPS53-202ENST00000389040 SMYD3Q9H7B4 428 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 SFXN1Q9H9B4 322 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 ACP6Q9NPH0 428 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 CISHQ9NSE2 258 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 POLIQ9UNA4 740 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 FAM50BQ9Y247 325 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 PCDHB5Q9Y5E4 795 aa10.75□□□□□ -0.69
VPS53-202ENST00000389040 FAM170AA1A519 330 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 WEE2P0C1S8 567 aa10.74□□□□□ -0.69
VPS53-202ENST00000389040 RPL17P18621 184 aaKnown RBP10.74□□□□□ -0.69
VPS53-202ENST00000389040 MAGEA11P43364 429 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms