RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 MAGEA4P43358 317 aa22.58■■□□□ 1.21
TRIM54-202ENST00000380075 NDST1P52848 882 aa22.58■■□□□ 1.21
TRIM54-202ENST00000380075 EXOC3L1Q86VI1 746 aa22.58■■□□□ 1.21
TRIM54-202ENST00000380075 CMASQ8NFW8 434 aaPredicted RBP22.58■■□□□ 1.21
TRIM54-202ENST00000380075 CFAP57Q96MR6 1250 aa22.58■■□□□ 1.21
TRIM54-202ENST00000380075 GLT1D1Q96MS3 346 aa22.58■■□□□ 1.21
TRIM54-202ENST00000380075 ZWILCHQ9H900 591 aa22.58■■□□□ 1.21
TRIM54-202ENST00000380075 F2P00734 622 aa22.58■■□□□ 1.2
TRIM54-202ENST00000380075 COL6A1P12109 1028 aa22.58■■□□□ 1.2
TRIM54-202ENST00000380075 IL1R2P27930 398 aa22.58■■□□□ 1.2
TRIM54-202ENST00000380075 GPS1Q13098 491 aa22.58■■□□□ 1.2
TRIM54-202ENST00000380075 GKAP1Q5VSY0 366 aaPredicted RBP22.58■■□□□ 1.2
TRIM54-202ENST00000380075 ARHGEF2Q92974 986 aaKnown RBP22.58■■□□□ 1.2
TRIM54-202ENST00000380075 TRIM66O15016 1216 aa22.57■■□□□ 1.2
TRIM54-202ENST00000380075 ZNF143P52747 638 aaPredicted RBP22.57■■□□□ 1.2
TRIM54-202ENST00000380075 ORC1Q13415 861 aa22.57■■□□□ 1.2
TRIM54-202ENST00000380075 SLC27A1Q6PCB7 646 aa22.57■■□□□ 1.2
TRIM54-202ENST00000380075 C6orf89Q6UWU4 347 aa22.57■■□□□ 1.2
TRIM54-202ENST00000380075 CPLX4Q7Z7G2 160 aa22.57■■□□□ 1.2
TRIM54-202ENST00000380075 ADAMTS10Q9H324 1103 aa22.57■■□□□ 1.2
TRIM54-202ENST00000380075 STARD7Q9NQZ5 370 aa22.57■■□□□ 1.2
TRIM54-202ENST00000380075 ACTL7BQ9Y614 415 aa22.57■■□□□ 1.2
TRIM54-202ENST00000380075 SMAPO00193 183 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 CABYRO75952 493 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 SETSIPP0DME0 302 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 DRD4P21917 467 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 PLCB3Q01970 1234 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 FAM102AQ5T9C2 384 aaPredicted RBP22.56■■□□□ 1.2
TRIM54-202ENST00000380075 UBE2Q1Q7Z7E8 422 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 TADA2BQ86TJ2 420 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 CACNA2D3Q8IZS8 1091 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 OTUD6BQ8N6M0 293 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 ACSF2Q96CM8 615 aaPredicted RBP22.56■■□□□ 1.2
TRIM54-202ENST00000380075 ZNF317Q96PQ6 595 aaPredicted RBP22.56■■□□□ 1.2
TRIM54-202ENST00000380075 CNPY3Q9BT09 278 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 C11orf49Q9H6J7 331 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 PPCSQ9HAB8 311 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 DNAJC17Q9NVM6 304 aaKnown RBP22.56■■□□□ 1.2
TRIM54-202ENST00000380075 NRCAMQ92823 1304 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 SGK1O00141 431 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 CST8O60676 142 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 GPD1P21695 349 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 MIPP30301 263 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 YARSP54577 528 aaKnown RBP22.56■■□□□ 1.2
TRIM54-202ENST00000380075 SNX16P57768 344 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 MFSD10Q14728 455 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 RNASEH2BQ5TBB1 312 aaKnown RBP22.56■■□□□ 1.2
TRIM54-202ENST00000380075 NECAB2Q7Z6G3 386 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 EMC1Q8N766 993 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 LRRC52Q8N7C0 313 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 KCTD6Q8NC69 237 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 RSAD1Q9HA92 442 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 USP18Q9UMW8 372 aa22.56■■□□□ 1.2
TRIM54-202ENST00000380075 RALGAPA2Q2PPJ7 1873 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 HAS3O00219 553 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 NPTXRO95502 500 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 TRUB2O95900 331 aaKnown RBP22.55■■□□□ 1.2
TRIM54-202ENST00000380075 PSEN2P49810 448 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 OTUD4Q01804 1114 aaKnown RBP22.55■■□□□ 1.2
TRIM54-202ENST00000380075 SMTNL2Q2TAL5 461 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 NBPF20Q3BBV1 942 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 GLIS1Q8NBF1 620 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 ACTL9Q8TC94 416 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 SEC16BQ96JE7 1060 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 SNX27Q96L92 541 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 NCAPGQ9BPX3 1015 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 TSPAN16Q9UKR8 245 aa22.55■■□□□ 1.2
TRIM54-202ENST00000380075 SMIM35A0A1B0GVV1 85 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 APOC4-APOC2K7ER74 178 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 APOC2P02655 101 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 AXLP30530 894 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 ATN1P54259 1190 aaPredicted RBP22.54■■□□□ 1.2
TRIM54-202ENST00000380075 NR1H3Q13133 447 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 CCDC142Q17RM4 750 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 NOTUMQ6P988 496 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 CENPUQ71F23 418 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 CATSPER4Q7RTX7 472 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 BEST2Q8NFU1 509 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 P3H4Q92791 437 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 C9orf72Q96LT7 481 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 PWWP2AQ96N64 755 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 TSPAN18Q96SJ8 248 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 TMEM121Q9BTD3 319 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 SAYSD1Q9NPB0 183 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 GPR32O75388 356 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 CPP00450 1065 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 ZSCAN5DPP0CG00 497 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 PECAM1P16284 738 aaPredicted RBP22.54■■□□□ 1.2
TRIM54-202ENST00000380075 HOXA11P31270 313 aaPredicted RBP22.54■■□□□ 1.2
TRIM54-202ENST00000380075 ITGA7Q13683 1181 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 KIZQ2M2Z5 673 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 KCNT1Q5JUK3 1230 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 PRUNE1Q86TP1 453 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 TDRPQ86YL5 185 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 UBA3Q8TBC4 463 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 HAUS1Q96CS2 278 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 KATNAL1Q9BW62 490 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 NSRP1Q9H0G5 558 aaKnown RBP22.54■■□□□ 1.2
TRIM54-202ENST00000380075 SETD4Q9NVD3 440 aa22.54■■□□□ 1.2
TRIM54-202ENST00000380075 MBLAC1A4D2B0 266 aaPredicted RBP22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms