RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 CFAP36Q96G28 342 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 TIPINQ9BVW5 301 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 RAB6CQ9H0N0 254 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 SLC7A8Q9UHI5 535 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 CAPN14A8MX76 684 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 TRIM49D1C9J1S8 452 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 E7ESA3 106 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 ALDH18A1P54886 795 aaKnown RBP19.28■□□□□ 0.68
CCDC3-201ENST00000378825 UBAP2LQ14157 1087 aaKnown RBP19.28■□□□□ 0.68
CCDC3-201ENST00000378825 CTAGE3PQ8IX95 158 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 NIM1KQ8IY84 436 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 PDIK1LQ8N165 341 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 CFAP61Q8NHU2 1237 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 EBF4Q9BQW3 602 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 PHACTR1Q9C0D0 580 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 OCEL1Q9H607 264 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 ARHGAP28Q9P2N2 729 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 PGAP2Q9UHJ9 254 aa19.28■□□□□ 0.68
CCDC3-201ENST00000378825 MAGEA13PA6NCF6 341 aa19.27■□□□□ 0.68
CCDC3-201ENST00000378825 TBC1D12O60347 775 aa19.27■□□□□ 0.68
CCDC3-201ENST00000378825 LRCH4O75427 683 aa19.27■□□□□ 0.68
CCDC3-201ENST00000378825 MMRN1Q13201 1228 aa19.27■□□□□ 0.68
CCDC3-201ENST00000378825 NCOA4Q13772 614 aa19.27■□□□□ 0.68
CCDC3-201ENST00000378825 KRT72Q14CN4 511 aa19.27■□□□□ 0.68
CCDC3-201ENST00000378825 NIPA1Q7RTP0 329 aa19.27■□□□□ 0.68
CCDC3-201ENST00000378825 CCDC60Q8IWA6 550 aaPredicted RBP19.27■□□□□ 0.68
CCDC3-201ENST00000378825 PPM1NQ8N819 430 aa19.27■□□□□ 0.68
CCDC3-201ENST00000378825 PDCD2LQ9BRP1 358 aa19.27■□□□□ 0.68
CCDC3-201ENST00000378825 RNASEH1O60930 286 aaKnown RBP19.27■□□□□ 0.67
CCDC3-201ENST00000378825 RNF8O76064 485 aa19.27■□□□□ 0.67
CCDC3-201ENST00000378825 INHBAP08476 426 aa19.27■□□□□ 0.67
CCDC3-201ENST00000378825 TNFSF9P41273 254 aa19.27■□□□□ 0.67
CCDC3-201ENST00000378825 IRX4P78413 519 aa19.27■□□□□ 0.67
CCDC3-201ENST00000378825 SLC25A11Q02978 314 aaKnown RBP19.27■□□□□ 0.67
CCDC3-201ENST00000378825 RAPH1Q70E73 1250 aa19.27■□□□□ 0.67
CCDC3-201ENST00000378825 USP6NLQ92738 828 aa19.27■□□□□ 0.67
CCDC3-201ENST00000378825 ZNF212Q9UDV6 495 aa19.27■□□□□ 0.67
CCDC3-201ENST00000378825 PLA2G4CQ9UP65 541 aa19.27■□□□□ 0.67
CCDC3-201ENST00000378825 WDR81Q562E7 1941 aa19.27■□□□□ 0.67
CCDC3-201ENST00000378825 PRR5-ARHGAP8B1AHC4 643 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 PLA2G6O60733 806 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 PSMA2P25787 234 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 ARHGAP8P85298 464 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 ZNF200P98182 395 aaPredicted RBP19.26■□□□□ 0.67
CCDC3-201ENST00000378825 ZNF772Q68DY9 489 aaPredicted RBP19.26■□□□□ 0.67
CCDC3-201ENST00000378825 ISLR2Q6UXK2 745 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 CHSY1Q86X52 802 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 ULK2Q8IYT8 1036 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 SLC44A1Q8WWI5 657 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 FBXO40Q9UH90 709 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 CYTH4Q9UIA0 394 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 PCDHA10Q9Y5I2 948 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 JAK3P52333 1124 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 RTP1P59025 263 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 MRPS5P82675 430 aaKnown RBP19.26■□□□□ 0.67
CCDC3-201ENST00000378825 FAM83AQ86UY5 434 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 SCUBE1Q8IWY4 988 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 HSPH1Q92598 858 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 MYOZ2Q9NPC6 264 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 IKBKGQ9Y6K9 419 aa19.26■□□□□ 0.67
CCDC3-201ENST00000378825 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP19.25■□□□□ 0.67
CCDC3-201ENST00000378825 GSTT1P30711 240 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 AQP5P55064 265 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 TMPRSS15P98073 1019 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 SLC18A2Q05940 514 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 LRRC38Q5VT99 294 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 RNF111Q6ZNA4 994 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 GSTCDQ8NEC7 633 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 CCDC110Q8TBZ0 833 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 ZNF526Q8TF50 670 aaPredicted RBP19.25■□□□□ 0.67
CCDC3-201ENST00000378825 ALKBH8Q96BT7 664 aaKnown RBP19.25■□□□□ 0.67
CCDC3-201ENST00000378825 GBP5Q96PP8 586 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 MMP19Q99542 508 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 SHCBP1LQ9BZQ2 653 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 DEFB129Q9H1M3 183 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 EBF3Q9H4W6 596 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 PPCSQ9HAB8 311 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 PDLIM7Q9NR12 457 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 SLC9A2Q9UBY0 812 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 LRRIQ4A6NIV6 560 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 TGDSO95455 350 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 SPATA31D3P0C874 917 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 RBP3P10745 1247 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 RAP1GDS1P52306 607 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 ZNF132P52740 706 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 EIF3EP60228 445 aaKnown RBP19.25■□□□□ 0.67
CCDC3-201ENST00000378825 MYL6P60660 151 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 PRKCEQ02156 737 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 CDC16Q13042 620 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 DPYSL3Q14195 570 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 CHI3L2Q15782 390 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 PTPN20Q4JDL3 420 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 ZC3H12AQ5D1E8 599 aaKnown RBP19.25■□□□□ 0.67
CCDC3-201ENST00000378825 SPATA31D4Q6ZUB0 917 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 EFCAB3Q8N7B9 438 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 PYDC1Q8WXC3 89 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 MMADHCQ9H3L0 296 aaPredicted RBP19.25■□□□□ 0.67
CCDC3-201ENST00000378825 SMYD2Q9NRG4 433 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 RIPK3Q9Y572 518 aa19.25■□□□□ 0.67
CCDC3-201ENST00000378825 COPEO14579 308 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms