RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 SUPT7LO94864 414 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 UBOX5O94941 541 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 CELF2O95319 508 aaKnown RBP11.84□□□□□ -0.51
PTPRF-203ENST00000372407 ALDH1A1P00352 501 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 F9P00740 461 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 ATP6V1B1P15313 513 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 RUNX1T1Q06455 604 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 CXCL9Q07325 125 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 C11orf63Q6NUN7 778 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.84□□□□□ -0.511e-7■□□□□ 8.6
PTPRF-203ENST00000372407 CD302Q8IX05 232 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 SAMD3Q8N6K7 520 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 CCDC126Q96EE4 140 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 GMCL1Q96IK5 515 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 FAR2Q96K12 515 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 SLITRK1Q96PX8 696 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 MTMR12Q9C0I1 747 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 LRRC40Q9H9A6 602 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 IL1RL2Q9HB29 575 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 SCN3BQ9NY72 215 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 MYO1GB0I1T2 1018 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 XPO1O14980 1071 aaKnown RBP11.84□□□□□ -0.51
PTPRF-203ENST00000372407 TPST1O60507 370 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 MAP3K6O95382 1288 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 GRK2P25098 689 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 TAF1CQ15572 869 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-203ENST00000372407 MAPRE1Q15691 268 aaKnown RBP11.84□□□□□ -0.51
PTPRF-203ENST00000372407 MRNIPQ6NTE8 343 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 APLFQ8IW19 511 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-203ENST00000372407 GTF3C2Q8WUA4 911 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-203ENST00000372407 TLR10Q9BXR5 811 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 GPR63Q9BZJ6 419 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 SFMBT1Q9UHJ3 866 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 PIK3C2AO00443 1686 aa11.84□□□□□ -0.51
PTPRF-203ENST00000372407 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.83□□□□□ -0.51
PTPRF-203ENST00000372407 RHOBTB1O94844 696 aa11.83□□□□□ -0.51
PTPRF-203ENST00000372407 ACO1P21399 889 aaKnown RBP11.83□□□□□ -0.51
PTPRF-203ENST00000372407 SOX11P35716 441 aa11.83□□□□□ -0.51
PTPRF-203ENST00000372407 PMS1P54277 932 aaKnown RBP11.83□□□□□ -0.51
PTPRF-203ENST00000372407 BTKQ06187 659 aa11.83□□□□□ -0.51
PTPRF-203ENST00000372407 SNAPC2Q13487 334 aa11.83□□□□□ -0.51
PTPRF-203ENST00000372407 KIAA2013Q8IYS2 634 aa11.83□□□□□ -0.51
PTPRF-203ENST00000372407 KIAA0895Q8NCT3 520 aa11.83□□□□□ -0.51
PTPRF-203ENST00000372407 ECSITQ9BQ95 431 aa11.83□□□□□ -0.51
PTPRF-203ENST00000372407 WDCPQ9H6R7 721 aa11.83□□□□□ -0.51
PTPRF-203ENST00000372407 BAZ2BQ9UIF8 2168 aaKnown RBP11.83□□□□□ -0.51
PTPRF-203ENST00000372407 STX7O15400 261 aaKnown RBP11.83□□□□□ -0.52
PTPRF-203ENST00000372407 DDNO94850 711 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-203ENST00000372407 ASMTLO95671 621 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 LSM8O95777 96 aaKnown RBP11.83□□□□□ -0.52
PTPRF-203ENST00000372407 CALB2P22676 271 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 HOXA10P31260 410 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-203ENST00000372407 CAP2P40123 477 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 GEMP55040 296 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 POU4F1Q01851 419 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SNX17Q15036 470 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 ZCWPW2Q504Y3 356 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 TTC33Q6PID6 262 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-203ENST00000372407 TMEM121Q9BTD3 319 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 DPP3Q9NY33 737 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SPDYE5A6NIY4 337 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 NPTXRO95502 500 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SLC2A3P11169 496 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 RALBP11234 206 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SPDYE7PQ495Y7 208 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SPOCD1Q6ZMY3 1216 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SCUBE1Q8IWY4 988 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 C4orf19Q8IY42 314 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SLC20A1Q8WUM9 679 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 PAWRQ96IZ0 340 aaKnown RBP11.83□□□□□ -0.52
PTPRF-203ENST00000372407 CGRRF1Q99675 332 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 WDR47O94967 919 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 PLOD1Q02809 727 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-203ENST00000372407 CRYMQ14894 314 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 Q4G0T1 1027 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SYTL3Q4VX76 610 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 NUDT18Q6ZVK8 323 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 ANKS3Q6ZW76 656 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 FAM162AQ96A26 154 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 TUBGCP3Q96CW5 907 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 MUC3BQ9H195 1237 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 EXOSC4Q9NPD3 245 aaKnown RBP11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SHOC2Q9UQ13 582 aa11.83□□□□□ -0.52
PTPRF-203ENST00000372407 SKAP2O75563 359 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 KRT8P05787 483 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 CNTFP26441 200 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 TM4SF1P30408 202 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 DSG1Q02413 1049 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 TBX2Q13207 712 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-203ENST00000372407 DGKDQ16760 1214 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 PKN3Q6P5Z2 889 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 TBC1D19Q8N5T2 526 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 STKLD1Q8NE28 680 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 OTULINQ96BN8 352 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 ZDHHC15Q96MV8 337 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 KCTD10Q9H3F6 313 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 NAALADL1Q9UQQ1 740 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 ATP11BQ9Y2G3 1177 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 ADGRA2Q96PE1 1338 aa11.82□□□□□ -0.52
PTPRF-203ENST00000372407 MMP14P50281 582 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms