RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 CST5P28325 142 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 SERPINB3P29508 390 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 PPP1R2P41236 205 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 LBX1P52954 281 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 DMP1Q13316 513 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 HLTFQ14527 1009 aaKnown RBP eCLIP3.86□□□□□ -1.79
MCF2-202ENST00000370573 PTPN21Q16825 1174 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 ERAP2Q6P179 960 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 SLC39A4Q6P5W5 647 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 FOXR2Q6PJQ5 311 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 LRRC55Q6ZSA7 311 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 ZC3H3Q8IXZ2 948 aaKnown RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 CSGALNACT2Q8N6G5 542 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 METTL13Q8N6R0 699 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 IFT74Q96LB3 600 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 NAP1L5Q96NT1 182 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 ACCSQ96QU6 501 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 TTC1Q99614 292 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.86□□□□□ -1.79
MCF2-202ENST00000370573 C17orf75Q9HAS0 396 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 KMT5AQ9NQR1 393 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 ANLNQ9NQW6 1124 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 DMAC2Q9NW81 257 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 TBX20Q9UMR3 447 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 TRAF3IP3Q9Y228 551 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 LUC7L2Q9Y383 392 aaKnown RBP3.86□□□□□ -1.79
MCF2-202ENST00000370573 TRAF6Q9Y4K3 522 aa3.86□□□□□ -1.79
MCF2-202ENST00000370573 NRCAMQ92823 1304 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 E2F8A0AVK6 867 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 BICDL2A1A5D9 508 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 LRRC10BA6NIK2 292 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 LRRIQ4A6NIV6 560 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 FBXO21O94952 628 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 NPTXRO95502 500 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 VTNP04004 478 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 IQCF3P0C7M6 154 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 HSPA1AP0DMV8 641 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 HSPA1BP0DMV9 641 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 CCL5P13501 91 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ADSSP30520 456 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 NAMPTP43490 491 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ZNF75DP51815 510 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ACLYP53396 1101 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 LRRC63Q05C16 580 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 KRT31Q15323 416 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 NFRKBQ6P4R8 1299 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 SARM1Q6SZW1 724 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 C22orf34Q6ZV56 151 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 CTU1Q7Z7A3 348 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 KRTAP19-1Q8IUB9 90 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 RHPN2Q8IUC4 686 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 CREG2Q8IUH2 290 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 AHI1Q8N157 1196 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 NXPE1Q8N323 547 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 DEPTORQ8TB45 409 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 TCP11Q8WWU5 503 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 PSPC1Q8WXF1 523 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 KCNN1Q92952 543 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 CTAGE1Q96RT6 745 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 PPP1R16BQ96T49 567 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 JPH2Q9BR39 696 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 DUSP15Q9H1R2 295 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 ADAMTS10Q9H324 1103 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 THAP9Q9H5L6 903 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 MINDY3Q9H8M7 445 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 GOLGA2P5Q9HBQ8 144 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 AGPAT3Q9NRZ7 376 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 INTS13Q9NVM9 706 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 IFNKQ9P0W0 207 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 LIMA1Q9UHB6 759 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 UBE4BO95155 1302 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 A0A087WZ62 844 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 SMIM35A0A1B0GVV1 85 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 TCRBV16S1A1N1A0A5B0 115 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 C17orf102A2RUQ5 167 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 KCNJ18B7U540 433 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 K7ERI5 159 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 SHOXO15266 292 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ASAP2O43150 1006 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ZEB2O60315 1214 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 GPR32O75388 356 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 CSDE1O75534 798 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 KIF20AO95235 890 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 NR3C1P04150 777 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ASLP04424 464 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 CYP2C9P11712 490 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 TPP2P29144 1249 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 GBP1P32455 592 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 KIR3DL1P43629 444 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 CASP4P49662 377 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 DNM2P50570 870 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 PTENP60484 403 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 FKBP3Q00688 224 aaKnown RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 TMEM62Q0P6H9 643 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ADAM9Q13443 819 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 ALCAMQ13740 583 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 KCNJ12Q14500 433 aa3.85□□□□□ -1.79
MCF2-202ENST00000370573 MXD4Q14582 209 aaPredicted RBP3.85□□□□□ -1.79
MCF2-202ENST00000370573 NFIL3Q16649 462 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms