RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 DENND1AQ8TEH3 1009 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 ZMAT2Q96NC0 199 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 WDR83Q9BRX9 315 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 MAK16Q9BXY0 300 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 ADAMTS10Q9H324 1103 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 ABCF3Q9NUQ8 709 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 SLC12A4Q9UP95 1085 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 PPEF2O14830 753 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 PRPF4O43172 522 aaKnown RBP eCLIP21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 DNAJC8O75937 253 aaPredicted RBP21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 TMEM63AO94886 807 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 KRT15P19012 456 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 TAC1P20366 129 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 SSTR1P30872 391 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 RDXP35241 583 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 DPYSL3Q14195 570 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 STILQ15468 1287 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 DCAF4L1Q3SXM0 396 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 CCDC14Q49A88 953 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 PKDCCQ504Y2 493 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 EFHC2Q5JST6 749 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 DPP9Q86TI2 863 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 MRRFQ96E11 262 aaKnown RBP21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 KIF9Q9HAQ2 790 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 PLEKHA5Q9HAU0 1116 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 SETD4Q9NVD3 440 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 MORF4L1Q9UBU8 362 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 SLC45A1Q9Y2W3 748 aa21.78■■□□□ 1.08
CCDC88B-203ENST00000359902 PRPSAP2O60256 369 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 SUN1O94901 812 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 ASMTLO95671 621 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 GSTA1P08263 222 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 SLC18A1P54219 525 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 NRLP54845 237 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 IL9RQ01113 521 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 XRCC4Q13426 336 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 NOMO1Q15155 1222 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 ZKSCAN8Q15776 578 aaPredicted RBP21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 CDO1Q16878 200 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 SPATA21Q7Z572 469 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 ACOT1Q86TX2 421 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 TTC30AQ86WT1 665 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 FBXO41Q8TF61 875 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 HAUS2Q9NVX0 235 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 SNTG2Q9NY99 539 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 SENP1Q9P0U3 644 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 NME7Q9Y5B8 376 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 SNX9Q9Y5X1 595 aa21.77■■□□□ 1.08
CCDC88B-203ENST00000359902 STIP1P31948 543 aaKnown RBP21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 GEMIN4P57678 1058 aaKnown RBP21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 TMEM62Q0P6H9 643 aa21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 C3orf62Q6ZUJ4 267 aa21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 SUGP1Q8IWZ8 645 aaKnown RBP21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 ATP11CQ8NB49 1132 aa21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 MAML3Q96JK9 1138 aa21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 PSMC3IPQ9P2W1 217 aaPredicted RBP21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 XPO7Q9UIA9 1087 aaKnown RBP21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 DERAQ9Y315 318 aa21.77■■□□□ 1.07
CCDC88B-203ENST00000359902 SMAPO00193 183 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 ZBTB6Q15916 424 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 DGKDQ16760 1214 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 CGB2Q6NT52 195 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 DARS2Q6PI48 645 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 OLFML1Q6UWY5 402 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 GPR142Q7Z601 462 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 ZC3H18Q86VM9 953 aaKnown RBP21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 FBXO36Q8NEA4 188 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 OR6J1Q8NGC5 347 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 KHSRPQ92945 711 aaKnown RBP eCLIP21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 RNF157Q96PX1 679 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 SMC6Q96SB8 1091 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 SLC4A5Q9BY07 1137 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 KLC4Q9NSK0 619 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 PRKAG3Q9UGI9 489 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 FETUBQ9UGM5 382 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 GINS2Q9Y248 185 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 SCN1AP35498 2009 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 TRIP11Q15643 1979 aa21.76■■□□□ 1.07
CCDC88B-203ENST00000359902 CCL15-CCL14A0A0B4J2E2 113 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 A0A1W2PPM1 405 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 IL4RP24394 825 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 PHBP35232 272 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 GCLCP48506 637 aaPredicted RBP21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 ATP11AP98196 1134 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 ROR1Q01973 937 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 TFDP2Q14188 446 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 CCL15Q16663 113 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 FAM47CQ5HY64 1035 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 FUKQ8N0W3 1084 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 C4orf33Q8N1A6 199 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 PAIP2Q9BPZ3 127 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 CDHR5Q9HBB8 845 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 SMG5Q9UPR3 1016 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 ARL2BPQ9Y2Y0 163 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 KAT6AQ92794 2004 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 DPYSL4O14531 572 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 GABBR2O75899 941 aa21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 BASP1P80723 227 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-203ENST00000359902 ACVR2BQ13705 512 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms