RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 GDF15Q99988 308 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 NUP85Q9BW27 656 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 ZBP1Q9H171 429 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 DNAJB4Q9UDY4 337 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 FEZ2Q9UHY8 353 aaPredicted RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 COLQQ9Y215 455 aaPredicted RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 BAZ2BQ9UIF8 2168 aaKnown RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 ITGB1P05556 798 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 CYP11B1P15538 503 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 PPP3CAQ08209 521 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 TFDP2Q14188 446 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 PPP2R5EQ16537 467 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 TATDN2Q93075 761 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 VCPIP1Q96JH7 1222 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 CNGB3Q9NQW8 809 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 INTUQ9ULD6 942 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 L1RE1Q9UN81 338 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 C2orf71A6NGG8 1288 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 GRXCR1A8MXD5 290 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 MAN2B1O00754 1011 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 CCR1P32246 355 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 ROR1Q01973 937 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 ZBTB41Q5SVQ8 909 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 ZNF564Q8TBZ8 553 aaPredicted RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 MSANTD3Q96H12 275 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 HAUS4Q9H6D7 363 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 WDCPQ9H6R7 721 aa9.63□□□□□ -0.87
UPF2-202ENST00000357604 WDR6Q9NNW5 1121 aaKnown RBP9.63□□□□□ -0.87
UPF2-202ENST00000357604 SSU72P8A0A1W2PR75 194 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 DAB1O75553 588 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 OAZ2O95190 189 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 C1QBPQ07021 282 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 ADIGQ0VDE8 80 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 NR1I3Q14994 352 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 CLEC16AQ2KHT3 1053 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 DCAF6Q58WW2 860 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 ARHGAP17Q68EM7 881 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 SLC39A4Q6P5W5 647 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 PGBD3Q8N328 593 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 MRPL43Q8N983 215 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 HJURPQ8NCD3 748 aaPredicted RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 TMEM174Q8WUU8 243 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 PRKD2Q9BZL6 878 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 VRTNQ9H8Y1 702 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 HOMER3Q9NSC5 361 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 ABHD10Q9NUJ1 306 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 HBS1LQ9Y450 684 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 PCDHA13Q9Y5I0 950 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 EPN1Q9Y6I3 576 aaPredicted RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 GOLGA8CPA6NN73 597 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 ATG13O75143 517 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 PDGFRAP16234 1089 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 EHHADHQ08426 723 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 DSG4Q86SJ6 1040 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 ARHGEF19Q8IW93 802 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 IPO11Q9UI26 975 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 ARHGAP42A6NI28 874 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 F8VZ95 297 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 EEF2KO00418 725 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 HEXIM1O94992 359 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 ACADMP11310 421 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 KCNA5P22460 613 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 SLC6A3Q01959 620 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 DUSP6Q16828 381 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 HABP4Q5JVS0 413 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 MMS22LQ6ZRQ5 1243 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 TTC13Q8NBP0 860 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 RSAD2Q8WXG1 361 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 RPGRIP1Q96KN7 1286 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 LHX5Q9H2C1 402 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 C8orf33Q9H7E9 229 aaPredicted RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 PNPLA8Q9NP80 782 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 ANO9A1A5B4 782 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 FTLP02792 175 aaPredicted RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 AIF1P55008 147 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 GRSF1Q12849 480 aaKnown RBP eCLIP9.62□□□□□ -0.87
UPF2-202ENST00000357604 TCEAL5Q5H9L2 206 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 C6orf118Q5T5N4 469 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 SUGP1Q8IWZ8 645 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 DDI1Q8WTU0 396 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 NXPE3Q969Y0 559 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 METTL5Q9NRN9 209 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 DUS2Q9NX74 493 aaKnown RBP9.62□□□□□ -0.87
UPF2-202ENST00000357604 GTF3C4Q9UKN8 822 aa9.62□□□□□ -0.87
UPF2-202ENST00000357604 LTFP02788 710 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 PMS1P54277 932 aaKnown RBP9.61□□□□□ -0.87
UPF2-202ENST00000357604 GAD2Q05329 585 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 MESDQ14696 234 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 DEPDC1BQ8WUY9 529 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 HSPH1Q92598 858 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 SKA1Q96BD8 255 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 STRA6Q9BX79 667 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 MIF4GDA9UHW6 222 aaKnown RBP9.61□□□□□ -0.87
UPF2-202ENST00000357604 GZMAP12544 262 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 ASPAP45381 313 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 DNA2P51530 1060 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 BIRC2Q13490 618 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 CBWD6Q4V339 395 aa9.61□□□□□ -0.87
UPF2-202ENST00000357604 CBWD3Q5JTY5 395 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms