RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 USP27XA6NNY8 438 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 YJEFN3A6XGL0 299 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 E7ENQ6 273 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 I6L893 689 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 FTLP02792 175 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 LCP1P13796 627 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 NPR3P17342 541 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 POU3F3P20264 500 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 SLC5A3P53794 718 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 RPL7AP62424 266 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 TSPY1Q01534 308 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 ASIC2Q16515 512 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 RAB41Q5JT25 222 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 SYPL2Q5VXT5 272 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 MMS22LQ6ZRQ5 1243 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 DNAJB7Q7Z6W7 309 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 SPATA2LQ8IUW3 424 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 SYN2Q92777 582 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 WBP2Q969T9 261 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 SAMD11Q96NU1 681 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 MED10Q9BTT4 135 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.25□□□□□ -1.73
LIG4-201ENST00000356922 IRX2Q9BZI1 471 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 RNF38Q9H0F5 515 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 S1PR5Q9H228 398 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 ST7Q9NRC1 585 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 PYCARDQ9ULZ3 195 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 PCDHGC3Q9UN70 934 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 MAGED2Q9UNF1 606 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 COG5Q9UP83 839 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 YIPF1Q9Y548 306 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 PCDHB5Q9Y5E4 795 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 INSL5Q9Y5Q6 135 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 NCANO14594 1321 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 WDFY3Q8IZQ1 3526 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 C2orf78A6NCI8 922 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 H7C4K7 107 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 SCAMP3O14828 347 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 GLUD1P00367 558 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 SERPING1P05155 500 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 RRM1P23921 792 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 RPL34P49207 117 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 KIF11P52732 1056 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 ATXN1P54253 815 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 OGDHQ02218 1023 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 ADIGQ0VDE8 80 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 PDCLQ13371 301 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 CLEC16AQ2KHT3 1053 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 TDRD12Q587J7 1177 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 GRASPQ7Z6J2 395 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 TMEM110Q86TL2 294 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 TMC8Q8IU68 726 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 EMC1Q8N766 993 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 JOSD2Q8TAC2 188 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 ITFG1Q8TB96 612 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 BTBD6Q96KE9 485 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 LRRC3BQ96PB8 259 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 C11orf70Q9BRQ4 267 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 SLC4A5Q9BY07 1137 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 THAP2Q9H0W7 228 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 SMG9Q9H0W8 520 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 GOLPH3Q9H4A6 298 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 OSGEPQ9NPF4 335 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 SEPT11Q9NVA2 429 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 USP3Q9Y6I4 520 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 GOLGA6L6A8MZA4 724 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 PRRG1O14668 218 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 MDM4O15151 490 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 PTMAP06454 111 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 ADH1AP07327 375 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 FAM200BP0CF97 657 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 TCF4P15884 667 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 FERP16591 822 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 ABCB4P21439 1286 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 RFX1P22670 979 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 MMP8P22894 467 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 SP100P23497 879 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 CDH5P33151 784 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 PDE6CP51160 858 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 COL19A1Q14993 1142 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 SKIV2LQ15477 1246 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 TSR1Q2NL82 804 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 MON1BQ7L1V2 547 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 EDEM1Q92611 657 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 MSLNLQ96KJ4 702 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 PANX2Q96RD6 677 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 BAG1Q99933 345 aaPredicted RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 ULBP1Q9BZM6 244 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 PDCL3Q9H2J4 239 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 NSUN3Q9H649 340 aaKnown RBP4.25□□□□□ -1.73
LIG4-201ENST00000356922 ANLNQ9NQW6 1124 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 TMPRSS4Q9NRS4 437 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 CLDND1Q9NY35 253 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 IMPACTQ9P2X3 320 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 MYO6Q9UM54 1294 aa4.25□□□□□ -1.73
LIG4-201ENST00000356922 MYO10Q9HD67 2058 aa4.24□□□□□ -1.73
LIG4-201ENST00000356922 SLC38A8A6NNN8 435 aa4.24□□□□□ -1.73
LIG4-201ENST00000356922 ZMYND10O75800 440 aa4.24□□□□□ -1.73
LIG4-201ENST00000356922 TPM1P09493 284 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms