RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.46□□□□□ -0.252e-7■■■■□ 23.4
CLK3-201ENST00000345005 TRPV6Q9H1D0 765 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 MTUS1Q9ULD2 1270 aa13.46□□□□□ -0.25
CLK3-201ENST00000345005 MGEA5O60502 916 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 GJB6O95452 261 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 MAGOHP61326 146 aaKnown RBP13.46□□□□□ -0.26
CLK3-201ENST00000345005 ADCY2Q08462 1091 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 CYB5D1Q6P9G0 228 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 SLC13A5Q86YT5 568 aaPredicted RBP13.46□□□□□ -0.26
CLK3-201ENST00000345005 TNS4Q8IZW8 715 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 NIPA2Q8N8Q9 360 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 FNIP1Q8TF40 1166 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 KBTBD7Q8WVZ9 684 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 MAIP1Q8WWC4 291 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 MAGOHBQ96A72 148 aaKnown RBP13.46□□□□□ -0.26
CLK3-201ENST00000345005 MCRS1Q96EZ8 462 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 TNIP3Q96KP6 325 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 XPO6Q96QU8 1125 aaKnown RBP13.46□□□□□ -0.26
CLK3-201ENST00000345005 DDX47Q9H0S4 455 aaKnown RBP13.46□□□□□ -0.26
CLK3-201ENST00000345005 CCDC134Q9H6E4 229 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 MTRF1LQ9UGC7 380 aaKnown RBP13.46□□□□□ -0.26
CLK3-201ENST00000345005 USTQ9Y2C2 406 aa13.46□□□□□ -0.26
CLK3-201ENST00000345005 CCT8L1PA6NM43 557 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 GOLGA8SH3BPF8 625 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 CYB561D2O14569 222 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 DAPK3O43293 454 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 CAPN15O75808 1086 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 AGTP01019 485 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 ERBB2P04626 1255 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 PFKMP08237 780 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 CETN2P41208 172 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 SSR1P43307 286 aaKnown RBP13.45□□□□□ -0.26
CLK3-201ENST00000345005 SCTRP47872 440 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 RIPK1Q13546 671 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 PKDCCQ504Y2 493 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 LRRC38Q5VT99 294 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 DENND2CQ68D51 928 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 AADACL2Q6P093 401 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 KATNAL2Q8IYT4 538 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 ADGRF2Q8IZF7 708 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 STK32AQ8WU08 396 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 DDX27Q96GQ7 796 aaKnown RBP13.45□□□□□ -0.26
CLK3-201ENST00000345005 ERP44Q9BS26 406 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 TXLNGYQ9BZA5 131 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 PABPC3Q9H361 631 aaKnown RBP13.45□□□□□ -0.26
CLK3-201ENST00000345005 RSAD1Q9HA92 442 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 MIOSQ9NXC5 875 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 MCM8Q9UJA3 840 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 NME7Q9Y5B8 376 aa13.45□□□□□ -0.26
CLK3-201ENST00000345005 FSCN2O14926 492 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 PDGFRBP09619 1106 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 FGFR1P11362 822 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 DRD4P21917 467 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 RFC1P35251 1148 aaPredicted RBP13.44□□□□□ -0.26
CLK3-201ENST00000345005 SCNN1GP51170 649 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 DR1Q01658 176 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 ACAP1Q15027 740 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 TAOK1Q7L7X3 1001 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 ADAT2Q7Z6V5 191 aaKnown RBP13.44□□□□□ -0.26
CLK3-201ENST00000345005 GBP7Q8N8V2 638 aaPredicted RBP13.44□□□□□ -0.26
CLK3-201ENST00000345005 RNF169Q8NCN4 708 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 EXD1Q8NHP7 514 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 CCT6BQ92526 530 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 BEGAINQ9BUH8 593 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 SAMD15Q9P1V8 674 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 AMACRQ9UHK6 382 aa13.44□□□□□ -0.26
CLK3-201ENST00000345005 MGRN1O60291 552 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 PHF2O75151 1096 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 PAX3P23760 479 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 LMO2P25791 158 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 CHRNA3P32297 505 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 TAS2R40P59535 323 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 TRADDQ15628 312 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 DUPD1Q68J44 220 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 ECHDC2Q86YB7 292 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 RCOR2Q8IZ40 523 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 TMEM86AQ8N2M4 240 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 ANKRD52Q8NB46 1076 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 SH3TC2Q8TF17 1288 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 SLC35F5Q8WV83 523 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 SENP8Q96LD8 212 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 SLC4A5Q9BY07 1137 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 ROPN1BQ9BZX4 212 aaPredicted RBP13.43□□□□□ -0.26
CLK3-201ENST00000345005 ROPN1Q9HAT0 212 aaPredicted RBP13.43□□□□□ -0.26
CLK3-201ENST00000345005 RGS18Q9NS28 235 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 FAM49BQ9NUQ9 324 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 TJP2Q9UDY2 1190 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 NR2E1Q9Y466 385 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 CCDC189A1A4V9 331 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 F8VP50 259 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 DNM1LO00429 736 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 EOMESO95936 686 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 PSMA2P25787 234 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 ATP5DP30049 168 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 MMP13P45452 471 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 CDK7P50613 346 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 CLCNKBP51801 687 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 PMS2P54278 862 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 BCAT1P54687 386 aa13.43□□□□□ -0.26
CLK3-201ENST00000345005 OGDHQ02218 1023 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms