RNA–Protein interactions for RNA: ENST00000340477.9

SYNE4-202, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE4, Length 1,004 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-202ENST00000340477 PAEPP09466 180 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 VDRP11473 427 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 MFAP3P55082 362 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 MYL5Q02045 173 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 TYRO3Q06418 890 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 KLHL40Q2TBA0 621 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 VWA3BQ502W6 1294 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 ARHGAP29Q52LW3 1261 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 TRIM65Q6PJ69 517 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 POTEHQ6S545 545 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 ARHGEF19Q8IW93 802 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 FLCNQ8NFG4 579 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 BPIFB1Q8TDL5 484 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 CSGALNACT1Q8TDX6 532 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 NDST4Q9H3R1 872 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 SAMSN1Q9NSI8 373 aaKnown RBP20.29■□□□□ 0.84
SYNE4-202ENST00000340477 TDP1Q9NUW8 608 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 HCN4Q9Y3Q4 1203 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 TRIOO75962 3097 aa20.29■□□□□ 0.84
SYNE4-202ENST00000340477 HELZP42694 1942 aaKnown RBP20.29■□□□□ 0.84
SYNE4-202ENST00000340477 NCANO14594 1321 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 PRAMEF12O95522 483 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 KRT5P13647 590 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 BCAT1P54687 386 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 PLCB2Q00722 1185 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 ZNF268Q14587 947 aaPredicted RBP20.28■□□□□ 0.84
SYNE4-202ENST00000340477 STILQ15468 1287 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 GOLGA7BQ2TAP0 167 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 TCP11X2Q5H9J9 407 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 CC2D1AQ6P1N0 951 aaPredicted RBP20.28■□□□□ 0.84
SYNE4-202ENST00000340477 C11orf57Q6ZUT1 292 aaPredicted RBP20.28■□□□□ 0.84
SYNE4-202ENST00000340477 UBR7Q8N806 425 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 RBBP8NLQ8NC74 664 aaPredicted RBP20.28■□□□□ 0.84
SYNE4-202ENST00000340477 UBE2TQ9NPD8 197 aaPredicted RBP20.28■□□□□ 0.84
SYNE4-202ENST00000340477 APEX2Q9UBZ4 518 aa20.28■□□□□ 0.84
SYNE4-202ENST00000340477 ZNF840PA6NDX5 716 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 TNFRSF10BO14763 440 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 CHADO15335 359 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 BEST1O76090 585 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 HDCP19113 662 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 PRKCQQ04759 706 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 FCHO2Q0JRZ9 810 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 MLF2Q15773 248 aaPredicted RBP20.27■□□□□ 0.84
SYNE4-202ENST00000340477 GPIHBP1Q8IV16 184 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 ANKRD52Q8NB46 1076 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 ZMIZ2Q8NF64 920 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 SCAMP5Q8TAC9 235 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 NACA2Q9H009 215 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 SMG9Q9H0W8 520 aaKnown RBP20.27■□□□□ 0.84
SYNE4-202ENST00000340477 TLR8Q9NR97 1041 aaKnown RBP20.27■□□□□ 0.84
SYNE4-202ENST00000340477 TSPAN16Q9UKR8 245 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 TICRRQ7Z2Z1 1910 aa20.27■□□□□ 0.84
SYNE4-202ENST00000340477 C2orf78A6NCI8 922 aa20.26■□□□□ 0.83
SYNE4-202ENST00000340477 ACO1P21399 889 aaKnown RBP20.26■□□□□ 0.83
SYNE4-202ENST00000340477 BST2Q10589 180 aaKnown RBP20.26■□□□□ 0.83
SYNE4-202ENST00000340477 SLC44A4Q53GD3 710 aa20.26■□□□□ 0.83
SYNE4-202ENST00000340477 PHLDB3Q6NSJ2 640 aa20.26■□□□□ 0.83
SYNE4-202ENST00000340477 ARL14EPQ8N8R7 260 aaPredicted RBP20.26■□□□□ 0.83
SYNE4-202ENST00000340477 TTC16Q8NEE8 873 aa20.26■□□□□ 0.83
SYNE4-202ENST00000340477 KAT5Q92993 513 aa20.26■□□□□ 0.83
SYNE4-202ENST00000340477 USP13Q92995 863 aaPredicted RBP20.26■□□□□ 0.83
SYNE4-202ENST00000340477 TBC1D17Q9HA65 648 aa20.26■□□□□ 0.83
SYNE4-202ENST00000340477 PDGFBP01127 241 aaPredicted RBP20.25■□□□□ 0.83
SYNE4-202ENST00000340477 SLC9A1P19634 815 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 CDK11BP21127 795 aaKnown RBP20.25■□□□□ 0.83
SYNE4-202ENST00000340477 TUBP50607 506 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 SKOR2Q2VWA4 1001 aaPredicted RBP20.25■□□□□ 0.83
SYNE4-202ENST00000340477 FKBP15Q5T1M5 1219 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 HECTD3Q5T447 861 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 CDKAL1Q5VV42 579 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 ASTLQ6HA08 431 aaPredicted RBP20.25■□□□□ 0.83
SYNE4-202ENST00000340477 RSPRY1Q96DX4 576 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 UBXN6Q9BZV1 441 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 TRPV5Q9NQA5 729 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 TAB2Q9NYJ8 693 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 IL37Q9NZH6 218 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 GMIPQ9P107 970 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 ARHGAP26Q9UNA1 814 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 SCML2Q9UQR0 700 aa20.25■□□□□ 0.83
SYNE4-202ENST00000340477 FAM92AA1XBS5 289 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 KRBA1A5PL33 1030 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 SETSIPP0DME0 302 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 PON1P27169 355 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 USP8P40818 1118 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 CLCN5P51795 746 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 ANO6Q4KMQ2 910 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 MIIPQ5JXC2 388 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 SMYD5Q6GMV2 418 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 TPRG1Q6ZUI0 275 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 DDX42Q86XP3 938 aaKnown RBP eCLIP20.24■□□□□ 0.83
SYNE4-202ENST00000340477 MSANTD3Q96H12 275 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 KREMEN1Q96MU8 473 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 CYP2S1Q96SQ9 504 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 FANCLQ9NW38 375 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 CHORDC1Q9UHD1 332 aaPredicted RBP20.24■□□□□ 0.83
SYNE4-202ENST00000340477 CCL26Q9Y258 94 aa20.24■□□□□ 0.83
SYNE4-202ENST00000340477 MRPS17Q9Y2R5 130 aaKnown RBP20.24■□□□□ 0.83
SYNE4-202ENST00000340477 KIF26AQ9ULI4 1882 aaPredicted RBP20.24■□□□□ 0.83
SYNE4-202ENST00000340477 O00370 1275 aa20.23■□□□□ 0.83
SYNE4-202ENST00000340477 MAN2B1O00754 1011 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms