RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 SMTNL2Q2TAL5 461 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 INTS6LQ5JSJ4 861 aaKnown RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 KCNT1Q5JUK3 1230 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 METTL23Q86XA0 190 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 CEP57Q86XR8 500 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 NPAS4Q8IUM7 802 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 RHOT1Q8IXI2 618 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 NIPA2Q8N8Q9 360 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 MYCBPAPQ8TBZ2 947 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 STK32AQ8WU08 396 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 RNF25Q96BH1 459 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 CFAP57Q96MR6 1250 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PEBP4Q96S96 227 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 HEMGNQ9BXL5 484 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 DDX47Q9H0S4 455 aaKnown RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 ZWILCHQ9H900 591 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 MARCH5Q9NX47 278 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PCSK1NQ9UHG2 260 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PCDHB8Q9UN66 801 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 COL4A6Q14031 1691 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 VWA8A3KMH1 1905 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 TMEM189-UBE2V1I3L0A0 370 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PSTPIP1O43586 416 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 SEC31AO94979 1220 aaKnown RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 KRT1P04264 644 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 RARAP10276 462 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 RALAP11233 206 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 KRT10P13645 584 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PDGFRAP16234 1089 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 EN2P19622 333 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 GPD1P21695 349 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 BDNFP23560 247 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 RPL34P49207 117 aaKnown RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 PITX1P78337 314 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 SLC25A11Q02978 314 aaKnown RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 YWHAHQ04917 246 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 ADCY2Q08462 1091 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 ADCY1Q08828 1119 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 IKBKEQ14164 716 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 SIX1Q15475 284 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 TRADDQ15628 312 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 CCDC14Q49A88 953 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 SEL1L2Q5TEA6 688 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 C8orf74Q6P047 294 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 FAM171BQ6P995 826 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 CNKSR3Q6P9H4 555 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 HFE2Q6ZVN8 426 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 CYP4V2Q6ZWL3 525 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 TAS1R1Q7RTX1 841 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 NECAB2Q7Z6G3 386 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 SLC13A5Q86YT5 568 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 CCDC50Q8IVM0 306 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 GSPT2Q8IYD1 628 aaKnown RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 KATNAL2Q8IYT4 538 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PRELID2Q8N945 189 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 STKLD1Q8NE28 680 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 RAPGEF5Q92565 580 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 FAM118BQ9BPY3 351 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 ACBD6Q9BR61 282 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 TMEM106CQ9BVX2 250 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 CALCOCO1Q9P1Z2 691 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 ADAM28Q9UKQ2 775 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 TTC7AQ9ULT0 858 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 FNDC1Q4ZHG4 1894 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 ESYT3A0FGR9 886 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 HHLA1C9JL84 531 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 SART1O43290 800 aaKnown RBP4.34□□□□□ -1.71
MCF2-201ENST00000338585 RAD51CO43502 376 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 DGKIO75912 1065 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 PARNO95453 639 aaKnown RBP4.34□□□□□ -1.71
MCF2-201ENST00000338585 TIMP1P01033 207 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 GALTP07902 379 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 GLI1P08151 1106 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 MYBL2P10244 700 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 RAG1P15918 1043 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 TYMPP19971 482 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 MIPP30301 263 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 TKTL1P51854 596 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 ZNF143P52747 638 aaPredicted RBP4.34□□□□□ -1.71
MCF2-201ENST00000338585 ATXN1P54253 815 aaKnown RBP4.34□□□□□ -1.71
MCF2-201ENST00000338585 SLC39A12Q504Y0 691 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 VARS2Q5ST30 1063 aaKnown RBP4.34□□□□□ -1.71
MCF2-201ENST00000338585 ZFYVE27Q5T4F4 411 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 FAM171A1Q5VUB5 890 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 TTC27Q6P3X3 843 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 MFSD7Q6UXD7 560 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 SLC26A9Q7LBE3 791 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 THEM5Q8N1Q8 247 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 TTC9BQ8N6N2 239 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 FNIP1Q8TF40 1166 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 ATG4AQ8WYN0 398 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 FAM149B1Q96BN6 582 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 HSFY1Q96LI6 401 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 PGLYRP2Q96PD5 576 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 CNPY3Q9BT09 278 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 ULBP1Q9BZM6 244 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 DNAI2Q9GZS0 605 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 MCOLN1Q9GZU1 580 aa4.34□□□□□ -1.71
MCF2-201ENST00000338585 LRRC4Q9HBW1 653 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms