RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 XPO6Q96QU8 1125 aaKnown RBP13.06□□□□□ -0.32
SDC3-201ENST00000336798 CCDC3Q9BQI4 270 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 NDEL1Q9GZM8 345 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 IGFLR1Q9H665 355 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 TRPC4Q9UBN4 977 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 NR5A2O00482 541 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 CYB561D2O14569 222 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 FGFR2P21802 821 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 SERPINB3P29508 390 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 GSSP48637 474 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 TRIM25Q14258 630 aaKnown RBP13.06□□□□□ -0.32
SDC3-201ENST00000336798 DENND1BQ6P3S1 775 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 PPIL6Q8IXY8 311 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 ZSWIM2Q8NEG5 633 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 PRMT7Q9NVM4 692 aaPredicted RBP13.06□□□□□ -0.32
SDC3-201ENST00000336798 RPS6KL1Q9Y6S9 549 aa13.06□□□□□ -0.32
SDC3-201ENST00000336798 SYNCRIPO60506 623 aaKnown RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 SH3BGRLO75368 114 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 ATP6V1B2P21281 511 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 SEC24CP53992 1094 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 TRIM71Q2Q1W2 868 aaKnown RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 USP49Q70CQ1 688 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 ARHGAP22Q7Z5H3 698 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 AAASQ9NRG9 546 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 PCDHB2Q9Y5E7 798 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 GRK2P25098 689 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 GEMIN4P57678 1058 aaKnown RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 TKFCQ3LXA3 575 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 AASDHQ4L235 1098 aaPredicted RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 GLMNQ92990 594 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 CEP41Q9BYV8 373 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 JMJD4Q9H9V9 463 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 MCM8Q9UJA3 840 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 TIMM13Q9Y5L4 95 aaPredicted RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 KATNA1O75449 491 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 HALP42357 657 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 CTXN3Q4LDR2 81 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 ZNF438Q7Z4V0 828 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 NANOGNBQ7Z5D8 188 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 FICDQ9BVA6 458 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 RSPH9Q9H1X1 276 aaPredicted RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 FBXO28Q9NVF7 368 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 NDOR1Q9UHB4 597 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 MTO1Q9Y2Z2 717 aaKnown RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 IGSF9BQ9UPX0 1349 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 IGF2BP3O00425 579 aaKnown RBP eCLIP13.05□□□□□ -0.32
SDC3-201ENST00000336798 PYGMP11217 842 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 DPEP1P16444 411 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 DSG3P32926 999 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 ATP12AP54707 1039 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 OXCT1P55809 520 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 TOMM20Q15388 145 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 ATG9AQ7Z3C6 839 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 DYRK1BQ9Y463 629 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 SLC12A8A0AV02 714 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 HNRNPRO43390 633 aaKnown RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 RNASEH1O60930 286 aaKnown RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 CKBP12277 381 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 YWHAQP27348 245 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 SLC29A2Q14542 456 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 NFIL3Q16649 462 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 PRR23CQ6ZRP0 262 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 TRPM8Q7Z2W7 1104 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 PTAR1Q7Z6K3 402 aaPredicted RBP13.05□□□□□ -0.32
SDC3-201ENST00000336798 ZNF333Q96JL9 665 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 SH3GL1Q99961 368 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 PARVBQ9HBI1 364 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 TMEM165Q9HC07 324 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 ARHGEF3Q9NR81 526 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 CDY2AQ9Y6F7 541 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 CDY1Q9Y6F8 540 aa13.05□□□□□ -0.32
SDC3-201ENST00000336798 RRM2P31350 389 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 CORO7P57737 925 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 TTLL9Q3SXZ7 439 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 WLSQ5T9L3 541 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 TMED8Q6PL24 325 aaPredicted RBP13.04□□□□□ -0.32
SDC3-201ENST00000336798 POTEAQ6S8J7 498 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 FAM43BQ6ZT52 329 aaPredicted RBP13.04□□□□□ -0.32
SDC3-201ENST00000336798 LINC00116Q8NCU8 138 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 GPRASP2Q96D09 838 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 ZIM3Q96PE6 472 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 SYNMO15061 1565 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 FAM47E-STBD1D6RA91 191 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 ZNF286BP0CG31 522 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 SERPINB1P30740 379 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 DEFA1P59665 94 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 DEFA3P59666 94 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 SREBF2Q12772 1141 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 MRPS31Q92665 395 aaKnown RBP13.04□□□□□ -0.32
SDC3-201ENST00000336798 SIKE1Q9BRV8 207 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 RUSC1Q9BVN2 902 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 NT5MQ9NPB1 228 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 INTS13Q9NVM9 706 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 PIH1D1Q9NWS0 290 aaKnown RBP13.04□□□□□ -0.32
SDC3-201ENST00000336798 TBX20Q9UMR3 447 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 MGAT4DA6NG13 374 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 GRIN3BO60391 1043 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 COILP38432 576 aaPredicted RBP13.04□□□□□ -0.32
SDC3-201ENST00000336798 HPS5Q9UPZ3 1129 aa13.04□□□□□ -0.32
SDC3-201ENST00000336798 OVOS2A0A0G2JMS6 1433 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms