RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 SLC26A9Q7LBE3 791 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 PHLDB2Q86SQ0 1253 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SDCCAG8Q86SQ7 713 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 FAM131BQ86XD5 332 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 WDR75Q8IWA0 830 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 RIBC1Q8N443 379 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 WDCPQ9H6R7 721 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 NSMCE4AQ9NXX6 385 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 MAGED2Q9UNF1 606 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SIGLEC16A6NMB1 481 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 APOC4-APOC2K7ER74 178 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 O00370 1275 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 APOC2P02655 101 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 RARGP13631 454 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 FDFT1P37268 417 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 AIF1P55008 147 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 GJA9P57773 515 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 NME3Q13232 169 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 RAB44Q7Z6P3 723 aaPredicted RBP7.15□□□□□ -1.26
SF3B1-201ENST00000335508 SLFN11Q7Z7L1 901 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 ZC3H18Q86VM9 953 aaKnown RBP7.15□□□□□ -1.26
SF3B1-201ENST00000335508 MON1AQ86VX9 555 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 POPDC2Q9HBU9 364 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 DMGDHQ9UI17 866 aaKnown RBP7.15□□□□□ -1.26
SF3B1-201ENST00000335508 AP4E1Q9UPM8 1137 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 SMG5Q9UPR3 1016 aaKnown RBP7.15□□□□□ -1.26
SF3B1-201ENST00000335508 APRTP07741 180 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 ELNP15502 786 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 GJB7Q6PEY0 223 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 C17orf99Q6UX52 265 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 NLRP9Q7RTR0 991 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 MIB1Q86YT6 1006 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 LRRC43Q8N309 656 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 DBF4BQ8NFT6 615 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 FAM172AQ8WUF8 416 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 KAT5Q92993 513 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 PABPC5Q96DU9 382 aaKnown RBP7.15□□□□□ -1.26
SF3B1-201ENST00000335508 MRRFQ96E11 262 aaKnown RBP7.15□□□□□ -1.26
SF3B1-201ENST00000335508 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.15□□□□□ -1.26
SF3B1-201ENST00000335508 STRCQ7RTU9 1775 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 IGKV6-21A0A0C4DH24 114 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 A0A0U1RQF3 1178 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 CD52P31358 61 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 MAPK8P45983 427 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 SULT1E1P49888 294 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 RPS6KA2Q15349 733 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 PRAMEF19Q5SWL8 479 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 MAP3K21Q5TCX8 1036 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 IRF2BP2Q7Z5L9 587 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 PHACTR1Q9C0D0 580 aa7.15□□□□□ -1.26
SF3B1-201ENST00000335508 RCOR3Q9P2K3 495 aaPredicted RBP7.15□□□□□ -1.26
SF3B1-201ENST00000335508 DNAJC25-GNG10A0A024R161 153 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 TBKBP1A7MCY6 615 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 NCK2O43639 380 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 SRGAP2O75044 1071 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 MMEP08473 750 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 FECHP22830 423 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 PRKCZQ05513 592 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 PLD1Q13393 1074 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 USP41Q3LFD5 358 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 ANKRD42Q8N9B4 389 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 UHMK1Q8TAS1 419 aaKnown RBP7.15□□□□□ -1.27
SF3B1-201ENST00000335508 PCDH9Q9HC56 1237 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 BDP1A6H8Y1 2624 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 ARHGAP42A6NI28 874 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 NEMP1O14524 444 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 EIF3HO15372 352 aaKnown RBP eCLIP7.15□□□□□ -1.272e-7■■■□□ 18.6
SF3B1-201ENST00000335508 STAU1O95793 577 aaKnown RBP7.15□□□□□ -1.27
SF3B1-201ENST00000335508 TTC4O95801 387 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 CHKAP35790 457 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 PDCLQ13371 301 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 PKN2Q16513 984 aaKnown RBP7.15□□□□□ -1.27
SF3B1-201ENST00000335508 TIGD7Q6NT04 549 aaPredicted RBP7.15□□□□□ -1.27
SF3B1-201ENST00000335508 C1orf127Q8N9H9 656 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 CD99L2Q8TCZ2 262 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 C1orf54Q8WWF1 131 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 PPM1EQ8WY54 764 aa7.15□□□□□ -1.27
SF3B1-201ENST00000335508 RIN2Q8WYP3 895 aaPredicted RBP7.15□□□□□ -1.27
SF3B1-201ENST00000335508 PABPC3Q9H361 631 aaKnown RBP7.15□□□□□ -1.27
SF3B1-201ENST00000335508 TLR8Q9NR97 1041 aaKnown RBP7.15□□□□□ -1.27
SF3B1-201ENST00000335508 TPX2Q9ULW0 747 aaKnown RBP7.15□□□□□ -1.27
SF3B1-201ENST00000335508 ESYT3A0FGR9 886 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 DYTNA2CJ06 578 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 TREHO43280 583 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 ACSL3O95573 720 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 TRUB2O95900 331 aaKnown RBP7.14□□□□□ -1.27
SF3B1-201ENST00000335508 INHAP05111 366 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 NFICP08651 508 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 AKAP5P24588 427 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SPARCL1Q14515 664 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 MEI1Q5TIA1 1274 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 LRRC8DQ7L1W4 858 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 UBA3Q8TBC4 463 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 SLC20A1Q8WUM9 679 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 TRIM54Q9BYV2 358 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 TISP43B9A030 160 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 B4GALT5O43286 388 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 ZMYND10O75800 440 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 AGTP01019 485 aa7.14□□□□□ -1.27
SF3B1-201ENST00000335508 POMCP01189 267 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms