RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ACOT1Q86TX2 421 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 NUP93Q8N1F7 819 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 CCDC34Q96HJ3 373 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 KCNK16Q96T55 309 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 KRT82Q9NSB4 513 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 SMPD4Q9NXE4 827 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 HMGXB4Q9UGU5 601 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 MYO16Q9Y6X6 1858 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 GPR179Q6PRD1 2367 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 IKBKBO14920 756 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 RNF40O75150 1001 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 AKAP3O75969 853 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 PAPSS2O95340 614 aaPredicted RBP20.73■□□□□ 0.91
LIME1-201ENST00000309546 KRT13P13646 458 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 PFKLP17858 780 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 YWHAQP27348 245 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 HOXC13P31276 330 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 GCLMP48507 274 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 GALK1P51570 392 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 SRSF5Q13243 272 aaKnown RBP20.73■□□□□ 0.91
LIME1-201ENST00000309546 BECN1Q14457 450 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 C1orf220Q5T0J3 134 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 FAM186BQ8IYM0 893 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 GUF1Q8N442 669 aaKnown RBP20.73■□□□□ 0.91
LIME1-201ENST00000309546 TAF4BQ92750 862 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 FBXO32Q969P5 355 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 EXOC4Q96A65 974 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 SMARCD1Q96GM5 515 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 RNF38Q9H0F5 515 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 FBRSL1Q9HCM7 1045 aaKnown RBP20.73■□□□□ 0.91
LIME1-201ENST00000309546 DMAP1Q9NPF5 467 aaPredicted RBP20.73■□□□□ 0.91
LIME1-201ENST00000309546 CPQQ9Y646 472 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 SPTBN4Q9H254 2564 aa20.73■□□□□ 0.91
LIME1-201ENST00000309546 SCAMP3O14828 347 aaKnown RBP20.72■□□□□ 0.91
LIME1-201ENST00000309546 MAPK13O15264 365 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 AP1G2O75843 785 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 RTN3O95197 1032 aaPredicted RBP20.72■□□□□ 0.91
LIME1-201ENST00000309546 ASS1P00966 412 aaKnown RBP20.72■□□□□ 0.91
LIME1-201ENST00000309546 OAS1P00973 400 aaKnown RBP20.72■□□□□ 0.91
LIME1-201ENST00000309546 MBL2P11226 248 aaPredicted RBP20.72■□□□□ 0.91
LIME1-201ENST00000309546 CCDC130P13994 396 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 TCF3P15923 654 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 RPL13P26373 211 aaKnown RBP20.72■□□□□ 0.91
LIME1-201ENST00000309546 ASPAP45381 313 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 NDST1P52848 882 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 ZXDBP98169 803 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 NR1H3Q13133 447 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 SIM2Q14190 667 aaPredicted RBP20.72■□□□□ 0.91
LIME1-201ENST00000309546 NFIL3Q16649 462 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 INTS8Q75QN2 995 aaKnown RBP20.72■□□□□ 0.91
LIME1-201ENST00000309546 LONP2Q86WA8 852 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 SMYD4Q8IYR2 804 aaPredicted RBP20.72■□□□□ 0.91
LIME1-201ENST00000309546 CD101Q93033 1021 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 IMPG2Q9BZV3 1241 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 LINC00597Q9H2U6 94 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 FAM49BQ9NUQ9 324 aa20.72■□□□□ 0.91
LIME1-201ENST00000309546 KIAA1549LQ6ZVL6 1849 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 NFATC1O95644 943 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 OLFM2O95897 454 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 DRD1P21728 446 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 SLC5A3P53794 718 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 SLC7A9P82251 487 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 ADAM9Q13443 819 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 PNOCQ13519 176 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 PAQR9Q6ZVX9 377 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 FUKQ8N0W3 1084 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 PDZD8Q8NEN9 1154 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 SCAMP5Q8TAC9 235 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 SLC2A14Q8TDB8 520 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 RMDN1Q96DB5 314 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 SLC8A2Q9UPR5 921 aa20.71■□□□□ 0.91
LIME1-201ENST00000309546 GOLGA6L4A6NEF3 574 aa20.7■□□□□ 0.9
LIME1-201ENST00000309546 ATG13O75143 517 aa20.7■□□□□ 0.9
LIME1-201ENST00000309546 TRIM21P19474 475 aaKnown RBP20.7■□□□□ 0.9
LIME1-201ENST00000309546 ADORA2BP29275 332 aa20.7■□□□□ 0.9
LIME1-201ENST00000309546 PSMC2P35998 433 aaKnown RBP20.7■□□□□ 0.9
LIME1-201ENST00000309546 PXNP49023 591 aaPredicted RBP20.7■□□□□ 0.9
LIME1-201ENST00000309546 PPP3CAQ08209 521 aa20.7■□□□□ 0.9
LIME1-201ENST00000309546 FILIP1Q7Z7B0 1213 aa20.7■□□□□ 0.9
LIME1-201ENST00000309546 TAS1R2Q8TE23 839 aa20.7■□□□□ 0.9
LIME1-201ENST00000309546 CFAP97Q9P2B7 532 aa20.7■□□□□ 0.9
LIME1-201ENST00000309546 USP18Q9UMW8 372 aa20.7■□□□□ 0.9
LIME1-201ENST00000309546 ZNF292O60281 2723 aa20.7■□□□□ 0.9
LIME1-201ENST00000309546 HRO43593 1189 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 ZCWPW2Q504Y3 356 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 LAIR1Q6GTX8 287 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 CEP68Q76N32 757 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.69■□□□□ 0.9
LIME1-201ENST00000309546 UNC93AQ86WB7 457 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 C12orf29Q8N999 325 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 CCDC150Q8NCX0 1101 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 RPLP0P6Q8NHW5 317 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 OVCA2Q8WZ82 227 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 JAKMIP2Q96AA8 810 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 EEF2KMTQ96G04 330 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 SMOQ99835 787 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 POLR3BQ9NW08 1133 aaPredicted RBP20.69■□□□□ 0.9
LIME1-201ENST00000309546 GMIPQ9P107 970 aa20.69■□□□□ 0.9
LIME1-201ENST00000309546 CHORDC1Q9UHD1 332 aaPredicted RBP20.69■□□□□ 0.9
LIME1-201ENST00000309546 BEST1O76090 585 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms