RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 FAM153BP0C7A2 387 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 FOSL2P15408 326 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 PAX3P23760 479 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 ADORA2BP29275 332 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 TKTP29401 623 aaKnown RBP12.48□□□□□ -0.41
TRIM40-205ENST00000307859 PCK1P35558 622 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 CDK7P50613 346 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 SLC6A3Q01959 620 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 TUSC3Q13454 348 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 TAZQ16635 292 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 HADHQ16836 314 aaKnown RBP12.48□□□□□ -0.41
TRIM40-205ENST00000307859 FAM153CQ494X1 144 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 MFSD7Q6UXD7 560 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 SPOCD1Q6ZMY3 1216 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 DDX42Q86XP3 938 aaKnown RBP eCLIP12.48□□□□□ -0.41
TRIM40-205ENST00000307859 FUKQ8N0W3 1084 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 SLC2A14Q8TDB8 520 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 KHSRPQ92945 711 aaKnown RBP eCLIP12.48□□□□□ -0.41
TRIM40-205ENST00000307859 RNF25Q96BH1 459 aaPredicted RBP12.48□□□□□ -0.41
TRIM40-205ENST00000307859 HSFY1Q96LI6 401 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 UROC1Q96N76 676 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 LBHD1Q9BQE6 289 aaPredicted RBP12.48□□□□□ -0.41
TRIM40-205ENST00000307859 DCLK3Q9C098 648 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 KLHL11Q9NVR0 708 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 FAM153AQ9UHL3 310 aa12.48□□□□□ -0.41
TRIM40-205ENST00000307859 TTC3P53804 2025 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 FNDC1Q4ZHG4 1894 aaPredicted RBP12.47□□□□□ -0.41
TRIM40-205ENST00000307859 C3orf70A6NLC5 250 aaPredicted RBP12.47□□□□□ -0.41
TRIM40-205ENST00000307859 PIK3R2O00459 728 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 XPO1O14980 1071 aaKnown RBP12.47□□□□□ -0.41
TRIM40-205ENST00000307859 RNF8O76064 485 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 EOMESO95936 686 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 PTPN1P18031 435 aaKnown RBP12.47□□□□□ -0.41
TRIM40-205ENST00000307859 IL1R2P27930 398 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 FLT3P36888 993 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 CDKN2BP42772 138 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 ACADSBP45954 432 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 LHX1P48742 406 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 GPS2Q13227 327 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 HLTFQ14527 1009 aaKnown RBP eCLIP12.47□□□□□ -0.41
TRIM40-205ENST00000307859 LLGL1Q15334 1064 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 CCNG2Q16589 344 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 CD300LGQ6UXG3 332 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 ARCQ7LC44 396 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 RTN4RL1Q86UN2 441 aaPredicted RBP12.47□□□□□ -0.41
TRIM40-205ENST00000307859 TSEN2Q8NCE0 465 aaKnown RBP12.47□□□□□ -0.41
TRIM40-205ENST00000307859 RNF169Q8NCN4 708 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 C1orf54Q8WWF1 131 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 RXFP2Q8WXD0 754 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 LINC01599Q8WXQ3 324 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 MYLIPQ8WY64 445 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 RAPGEF5Q92565 580 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 PAAF1Q9BRP4 392 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 NEUROG2Q9H2A3 272 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 CHST7Q9NS84 486 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 ASNSD1Q9NWL6 643 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 DDX43Q9NXZ2 648 aaKnown RBP12.47□□□□□ -0.41
TRIM40-205ENST00000307859 EFR3BQ9Y2G0 817 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 R3HDM2Q9Y2K5 976 aaKnown RBP12.47□□□□□ -0.41
TRIM40-205ENST00000307859 VCANP13611 3396 aa12.47□□□□□ -0.41
TRIM40-205ENST00000307859 hCG_1818297A0A087WSY0 165 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 PI4K2BG5E9Z4 385 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 ATP2C2O75185 946 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 TJP3O95049 919 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 ECEL1O95672 775 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 POMCP01189 267 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 CYP11A1P05108 521 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 ACAT1P24752 427 aaKnown RBP12.46□□□□□ -0.41
TRIM40-205ENST00000307859 MIPP30301 263 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 GBP1P32455 592 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 HSPA9P38646 679 aaKnown RBP12.46□□□□□ -0.41
TRIM40-205ENST00000307859 FAM189BP81408 668 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 CBX1P83916 185 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 SMAD3P84022 425 aaKnown RBP12.46□□□□□ -0.41
TRIM40-205ENST00000307859 PLCB3Q01970 1234 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 TIGD5Q53EQ6 642 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 TFDP3Q5H9I0 405 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 KIAA0319Q5VV43 1072 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 DSTYKQ6XUX3 929 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 PAQR9Q6ZVX9 377 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 SYDE1Q6ZW31 735 aaPredicted RBP12.46□□□□□ -0.41
TRIM40-205ENST00000307859 SLC24A5Q71RS6 500 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 LRRC8DQ7L1W4 858 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 SLC26A9Q7LBE3 791 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 FAM126BQ8IXS8 530 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 CCDC105Q8IYK2 499 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 HEMGNQ9BXL5 484 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 DUSP16Q9BY84 665 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 DPH5Q9H2P9 285 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 ZDHHC18Q9NUE0 388 aa12.46□□□□□ -0.41
TRIM40-205ENST00000307859 COL4A4P53420 1690 aaPredicted RBP12.46□□□□□ -0.42
TRIM40-205ENST00000307859 MYO16Q9Y6X6 1858 aa12.45□□□□□ -0.42
TRIM40-205ENST00000307859 LRRD1A4D1F6 860 aa12.45□□□□□ -0.42
TRIM40-205ENST00000307859 H3BQF6 201 aa12.45□□□□□ -0.42
TRIM40-205ENST00000307859 TRUB2O95900 331 aaKnown RBP12.45□□□□□ -0.42
TRIM40-205ENST00000307859 SELPP16109 830 aa12.45□□□□□ -0.42
TRIM40-205ENST00000307859 PDGFRAP16234 1089 aa12.45□□□□□ -0.42
TRIM40-205ENST00000307859 NPR3P17342 541 aa12.45□□□□□ -0.42
TRIM40-205ENST00000307859 KCNJ1P48048 391 aa12.45□□□□□ -0.42
TRIM40-205ENST00000307859 CCDC14Q49A88 953 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms