RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 CDC42EP4Q9H3Q1 356 aaKnown RBP6.87□□□□□ -1.31
USP47-201ENST00000305481 FAM105AQ9NUU6 356 aa6.87□□□□□ -1.31
USP47-201ENST00000305481 RNF186Q9NXI6 227 aa6.87□□□□□ -1.31
USP47-201ENST00000305481 GOLGA6L10A6NI86 522 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 RNF8O76064 485 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 ITGAVP06756 1048 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 SETSIPP0DME0 302 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 RARBP10826 455 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 PECAM1P16284 738 aaPredicted RBP6.86□□□□□ -1.31
USP47-201ENST00000305481 IL4RP24394 825 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 ADORA2BP29275 332 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 GDF10P55107 478 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 ATP11AP98196 1134 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 PPARDQ03181 441 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 CDO1Q16878 200 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 ODF2Q5BJF6 829 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 FAM47CQ5HY64 1035 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 AGBL2Q5U5Z8 902 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 KIAA0319Q5VV43 1072 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 IZUMO3Q5VZ72 239 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 GSTA5Q7RTV2 222 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 ADGRF2Q8IZF7 708 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 KCTD6Q8NC69 237 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 KLHDC9Q8NEP7 349 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 ACTL9Q8TC94 416 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 SLC2A14Q8TDB8 520 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 TLCD1Q96CP7 247 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 ZNF560Q96MR9 790 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 GAD1Q99259 594 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 XPNPEP3Q9NQH7 507 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 NOVA2Q9UNW9 492 aaKnown RBP6.86□□□□□ -1.31
USP47-201ENST00000305481 DPYSL4O14531 572 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 XPOTO43592 962 aaKnown RBP6.86□□□□□ -1.31
USP47-201ENST00000305481 AOC2O75106 756 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 WARSP23381 471 aaKnown RBP6.86□□□□□ -1.31
USP47-201ENST00000305481 HPDP32754 393 aaPredicted RBP6.86□□□□□ -1.31
USP47-201ENST00000305481 MLH1P40692 756 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 HNRNPH2P55795 449 aaKnown RBP6.86□□□□□ -1.31
USP47-201ENST00000305481 GNGT1P63211 74 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 OTUD4Q01804 1114 aaKnown RBP6.86□□□□□ -1.31
USP47-201ENST00000305481 GUCY1A3Q02108 690 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 LMNB2Q03252 620 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 IFFO1Q0D2I5 559 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 SV2CQ496J9 727 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 AGMOQ6ZNB7 445 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 PAQR9Q6ZVX9 377 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 TRMT10CQ7L0Y3 403 aaKnown RBP6.86□□□□□ -1.31
USP47-201ENST00000305481 RPAINQ86UA6 219 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 HHIPL1Q96JK4 782 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 C11orf84Q9BUA3 381 aaPredicted RBP6.86□□□□□ -1.31
USP47-201ENST00000305481 STAU2Q9NUL3 570 aaKnown RBP eCLIP6.86□□□□□ -1.31
USP47-201ENST00000305481 HESX1Q9UBX0 185 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 SLC12A6Q9UHW9 1150 aa6.86□□□□□ -1.31
USP47-201ENST00000305481 ARL5CA6NH57 179 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 M0QZ92 97 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 GABRDO14764 452 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 MGEA5O60502 916 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 HUS1O60921 280 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 BEST1O76090 585 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 PRKAR2AP13861 404 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 ACAT1P24752 427 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 HDAC4P56524 1084 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 MAGOHP61326 146 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 BST2Q10589 180 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 DPYSL3Q14195 570 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 ZSCAN26Q16670 478 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 KYNUQ16719 465 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 SKIDA1Q1XH10 827 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 ZC3H12AQ5D1E8 599 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 WSCD1Q658N2 575 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 FUKQ8N0W3 1084 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 TOP6BLQ8N6T0 577 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 B3GALNT2Q8NCR0 500 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 C3orf58Q8NDZ4 430 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 EPS8L3Q8TE67 593 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 PAAF1Q9BRP4 392 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 TMEM109Q9BVC6 243 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 CALN1Q9BXU9 219 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 SNX25Q9H3E2 840 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 CALCOCO1Q9P1Z2 691 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 CLDN5O00501 218 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 CYB561D2O14569 222 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 KIF3CO14782 793 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 EIF3HO15372 352 aaKnown RBP eCLIP6.85□□□□□ -1.31
USP47-201ENST00000305481 ACSL3O95573 720 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 TTC4O95801 387 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 CLCNKBP51801 687 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 IFI35P80217 286 aaPredicted RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 PLCB3Q01970 1234 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 CAV1Q03135 178 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 CA9Q16790 459 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 TNFAIP8L3Q5GJ75 292 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 NPNTQ6UXI9 565 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 FAM172AQ8WUF8 416 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 NDRG1Q92597 394 aaKnown RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 PGM2Q96G03 612 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 MAGEB5Q9BZ81 275 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 TSPYL2Q9H2G4 693 aaPredicted RBP6.85□□□□□ -1.31
USP47-201ENST00000305481 SPC25Q9HBM1 224 aa6.85□□□□□ -1.31
USP47-201ENST00000305481 CHST12Q9NRB3 414 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms