RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 KLF1Q13351 362 aaPredicted RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 DHX34Q14147 1143 aaKnown RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 TCTN1Q2MV58 587 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 CLEC20AQ6ZU45 233 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 SLC26A9Q7LBE3 791 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 ARCQ7LC44 396 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 CTU1Q7Z7A3 348 aaKnown RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 PIGZQ86VD9 579 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 MYCBPAPQ8TBZ2 947 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 KCTD13Q8WZ19 329 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 HINFPQ9BQA5 517 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 OSBPL8Q9BZF1 889 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 HIPK3Q9H422 1215 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 EPB41L5Q9HCM4 733 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 PCYOX1Q9UHG3 505 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 CEP350Q5VT06 3117 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 MYBPHLA2RUH7 354 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 ZSCAN5CA6NGD5 496 aaPredicted RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 KRT1P04264 644 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 KRT7P08729 469 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 RALAP11233 206 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 PDGFRAP16234 1089 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 PTPN7P35236 360 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 COPS2P61201 443 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 HADHQ16836 314 aaKnown RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 SWT1Q5T5J6 900 aaKnown RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 FBXO46Q6PJ61 603 aaPredicted RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 CCDC50Q8IVM0 306 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 SUGP1Q8IWZ8 645 aaKnown RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 CRIPAKQ8N1N5 446 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 HASPINQ8TF76 798 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 AENQ8WTP8 325 aaKnown RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 MAGOHBQ96A72 148 aaKnown RBP16.31■□□□□ 0.2
LSM6-201ENST00000296581 SLITRK1Q96PX8 696 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 FUT8Q9BYC5 575 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 LRRC19Q9H756 370 aa16.31■□□□□ 0.2
LSM6-201ENST00000296581 FAM187AA6NFU0 413 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 TTI1O43156 1089 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 RNF8O76064 485 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 FAM200BP0CF97 657 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 IL1R2P27930 398 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 CETN2P41208 172 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 TLE2Q04725 743 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 TAF5Q15542 800 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 TRIM60Q495X7 471 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 FAM171BQ6P995 826 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 ANKS1BQ7Z6G8 1248 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 FAM35AQ86V20 835 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 EIF1ADQ8N9N8 165 aaKnown RBP16.3■□□□□ 0.2
LSM6-201ENST00000296581 CASKIN2Q8WXE0 1202 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 SEC14L1Q92503 715 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 ARMC5Q96C12 935 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 PCED1BQ96HM7 432 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 RUNDC3BQ96NL0 473 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 PKMYT1Q99640 499 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 MED10Q9BTT4 135 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 PSD3Q9NYI0 1048 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 PCDHB8Q9UN66 801 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 PCDHB7Q9Y5E2 793 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 F8W810 466 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 GRAP2O75791 330 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 BEST1O76090 585 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 MIPP30301 263 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 PTGIRP43119 386 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 FNTAP49354 379 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 DR1Q01658 176 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 CCDC14Q49A88 953 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 INTS6LQ5JSJ4 861 aaKnown RBP16.3■□□□□ 0.2
LSM6-201ENST00000296581 TTC27Q6P3X3 843 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 RNF25Q96BH1 459 aaPredicted RBP16.3■□□□□ 0.2
LSM6-201ENST00000296581 SCLYQ96I15 445 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 PLEKHA4Q9H4M7 779 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 KRT82Q9NSB4 513 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 KLHL11Q9NVR0 708 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 SUFUQ9UMX1 484 aa16.3■□□□□ 0.2
LSM6-201ENST00000296581 LCP1P13796 627 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 COILP38432 576 aaPredicted RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 MFSD7Q6UXD7 560 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 SPOCD1Q6ZMY3 1216 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 GSPT2Q8IYD1 628 aaKnown RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 CLEC4CQ8WTT0 213 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 RAPGEF5Q92565 580 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 MED4Q9NPJ6 270 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 ESYT3A0FGR9 886 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 C3orf70A6NLC5 250 aaPredicted RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 PI4K2BG5E9Z4 385 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 MAP2K7O14733 419 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 TRUB2O95900 331 aaKnown RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 ACTN2P35609 894 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 PTPN9P43378 593 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 CARSP49589 748 aaKnown RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 RNASELQ05823 741 aaKnown RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 ADCY1Q08828 1119 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 SMC1AQ14683 1233 aaKnown RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 LLGL1Q15334 1064 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 OVOS1Q6IE37 1185 aa16.29■□□□□ 0.2
LSM6-201ENST00000296581 CCDC137Q6PK04 289 aaKnown RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 DIS3LQ8TF46 1054 aaKnown RBP16.29■□□□□ 0.2
LSM6-201ENST00000296581 EXOC4Q96A65 974 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms