RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 MAD1L1Q9Y6D9 718 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 hCG_1818297A0A087WSY0 165 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 SPAG7O75391 227 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 HOXC6P09630 235 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 MBTD1Q05BQ5 628 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 CASC4Q6P4E1 433 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 TXNRD2Q9NNW7 524 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 PSMC3IPQ9P2W1 217 aaPredicted RBP17.01■□□□□ 0.31
CTCF-201ENST00000264010 SLC12A6Q9UHW9 1150 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 NAALADL1Q9UQQ1 740 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 IQANK1A0A1B0GTG1 560 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 APOL1O14791 398 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 CAPN9O14815 690 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 MYL3P08590 195 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 ADORA2BP29275 332 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 RNASELQ05823 741 aaKnown RBP17.01■□□□□ 0.31
CTCF-201ENST00000264010 RXFP2Q8WXD0 754 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 TFAP2BQ92481 460 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 LRRC4Q9HBW1 653 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 DYTNA2CJ06 578 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 CCT8L1PA6NM43 557 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 ZSCAN5DPP0CG00 497 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 PECAM1P16284 738 aaPredicted RBP17.01■□□□□ 0.31
CTCF-201ENST00000264010 STIP1P31948 543 aaKnown RBP17.01■□□□□ 0.31
CTCF-201ENST00000264010 PTPN20Q4JDL3 420 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 EMC10Q5UCC4 262 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 ALLCQ8N6M5 410 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 FAM71DQ8N9W8 422 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 GRAMD1AQ96CP6 724 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 CYTH2Q99418 400 aa17.01■□□□□ 0.31
CTCF-201ENST00000264010 XPO7Q9UIA9 1087 aaKnown RBP17.01■□□□□ 0.31
CTCF-201ENST00000264010 PIN4Q9Y237 131 aaKnown RBP17.01■□□□□ 0.31
CTCF-201ENST00000264010 USP15Q9Y4E8 981 aaPredicted RBP17.01■□□□□ 0.31
CTCF-201ENST00000264010 GPR25O00155 361 aa17■□□□□ 0.31
CTCF-201ENST00000264010 CPP00450 1065 aa17■□□□□ 0.31
CTCF-201ENST00000264010 MFSD5Q6N075 450 aa17■□□□□ 0.31
CTCF-201ENST00000264010 PLEKHH3Q7Z736 793 aa17■□□□□ 0.31
CTCF-201ENST00000264010 TEKT4Q8WW24 435 aa17■□□□□ 0.31
CTCF-201ENST00000264010 DLGAP2Q9P1A6 1054 aa17■□□□□ 0.31
CTCF-201ENST00000264010 KCNH4Q9UQ05 1017 aa17■□□□□ 0.31
CTCF-201ENST00000264010 ADGRA2Q96PE1 1338 aa17■□□□□ 0.31
CTCF-201ENST00000264010 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17■□□□□ 0.31
CTCF-201ENST00000264010 ANP32DO95626 131 aa17■□□□□ 0.31
CTCF-201ENST00000264010 CD4P01730 458 aa17■□□□□ 0.31
CTCF-201ENST00000264010 KDELR1P24390 212 aa17■□□□□ 0.31
CTCF-201ENST00000264010 MIPP30301 263 aa17■□□□□ 0.31
CTCF-201ENST00000264010 ACOT1Q86TX2 421 aa17■□□□□ 0.31
CTCF-201ENST00000264010 ZNF410Q86VK4 478 aa17■□□□□ 0.31
CTCF-201ENST00000264010 C1orf127Q8N9H9 656 aa17■□□□□ 0.31
CTCF-201ENST00000264010 TSPAN16Q9UKR8 245 aa17■□□□□ 0.31
CTCF-201ENST00000264010 SYNJ2BP-COX16A0A087WUM0 186 aa17■□□□□ 0.31
CTCF-201ENST00000264010 CFAP69A5D8W1 941 aa17■□□□□ 0.31
CTCF-201ENST00000264010 ZBTB48P10074 688 aaPredicted RBP17■□□□□ 0.31
CTCF-201ENST00000264010 RAD23BP54727 409 aa17■□□□□ 0.31
CTCF-201ENST00000264010 RFX8Q6ZV50 586 aa17■□□□□ 0.31
CTCF-201ENST00000264010 SPATA21Q7Z572 469 aa17■□□□□ 0.31
CTCF-201ENST00000264010 CFAP36Q96G28 342 aa17■□□□□ 0.31
CTCF-201ENST00000264010 FGD4Q96M96 766 aa17■□□□□ 0.31
CTCF-201ENST00000264010 NOD2Q9HC29 1040 aa17■□□□□ 0.31
CTCF-201ENST00000264010 FGFR1OP2Q9NVK5 253 aa17■□□□□ 0.31
CTCF-201ENST00000264010 COX16Q9P0S2 106 aa17■□□□□ 0.31
CTCF-201ENST00000264010 TTLL13PA6NNM8 815 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 ARF4P18085 180 aaPredicted RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 TPP2P29144 1249 aaPredicted RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 SH2D4BQ5SQS7 431 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 YTHDF3Q7Z739 585 aaKnown RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 CDKL3Q8IVW4 592 aaPredicted RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 PWWP2AQ96N64 755 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 DHX35Q9H5Z1 703 aaKnown RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 CNTN6Q9UQ52 1028 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 C22orf31O95567 290 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 ZFXP17010 805 aaPredicted RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 USP4Q13107 963 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 TWF2Q6IBS0 349 aaKnown RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 C3orf62Q6ZUJ4 267 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 PDZD4Q76G19 769 aaPredicted RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 BZW1Q7L1Q6 419 aaKnown RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 PRUNE1Q86TP1 453 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 PPTC7Q8NI37 304 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 KAT2BQ92831 832 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 ABHD16BQ9H3Z7 469 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 SETD4Q9NVD3 440 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 UBQLN1Q9UMX0 589 aaKnown RBP16.99■□□□□ 0.31
CTCF-201ENST00000264010 C2CD2Q9Y426 696 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 ITGAVP06756 1048 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 OLFML2BQ68BL8 750 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 MTHFD1LQ6UB35 978 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 EXOC3L1Q86VI1 746 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 LRRC43Q8N309 656 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 OLIG1Q8TAK6 271 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 TNIP3Q96KP6 325 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 SPC25Q9HBM1 224 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 UBN1Q9NPG3 1134 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 PAK5Q9P286 719 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 ARL2BPQ9Y2Y0 163 aa16.99■□□□□ 0.31
CTCF-201ENST00000264010 KCNN4O15554 427 aa16.98■□□□□ 0.31
CTCF-201ENST00000264010 PDGFRBP09619 1106 aa16.98■□□□□ 0.31
CTCF-201ENST00000264010 SIX1Q15475 284 aaPredicted RBP16.98■□□□□ 0.31
CTCF-201ENST00000264010 RSPH3Q86UC2 560 aa16.98■□□□□ 0.31
CTCF-201ENST00000264010 SIX6OS1Q8N1H7 587 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms