RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 KIAA0319LQ8IZA0 1049 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 TTC13Q8NBP0 860 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 PPFIBP2Q8ND30 876 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 NSL1Q96IY1 281 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 SERAC1Q96JX3 654 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 ACAP3Q96P50 834 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 TTC1Q99614 292 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 RAB6CQ9H0N0 254 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 HACL1Q9UJ83 578 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 MAGED2Q9UNF1 606 aaPredicted RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 B4GALT5O43286 388 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 SMIM24O75264 130 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 TOM1L1O75674 476 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 PDGFRAP16234 1089 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 TCF7P36402 384 aaPredicted RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 ALDH18A1P54886 795 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 YWHAEP62258 255 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 THOC5Q13769 683 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 DPYSL3Q14195 570 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 LY6KQ17RY6 165 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 SLC45A4Q5BKX6 768 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 EFHC2Q5JST6 749 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 ZCCHC23Q6ZST2 131 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 SHCBP1LQ9BZQ2 653 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 EURLQ9NYK6 297 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 MAP3K20Q9NYL2 800 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 DLGAP2Q9P1A6 1054 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 USP18Q9UMW8 372 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 ANKRD31Q8N7Z5 1873 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 CNTNAP2Q9UHC6 1331 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 TCRBV9S1A1TA0A576 114 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 PRPSAP2O60256 369 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 ADCY3O60266 1144 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 PGM1P36871 562 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 TMEM154Q6P9G4 183 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 ALYREFQ86V81 257 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 BRSK2Q8IWQ3 736 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 MICALL2Q8IY33 904 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 NETO2Q8NC67 525 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 HIPK4Q8NE63 616 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 NKD2Q969F2 451 aaPredicted RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 CADM1Q9BY67 442 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 ACSS3Q9H6R3 686 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 RNF19AQ9NV58 838 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 PCMTD2Q9NV79 361 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 STRIP2Q9ULQ0 834 aa13.2□□□□□ -0.3
LIG1-201ENST00000263274 G3BP2Q9UN86 482 aaKnown RBP13.2□□□□□ -0.3
LIG1-201ENST00000263274 ARHGAP42A6NI28 874 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 C2CD2LO14523 706 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 CYB561D2O14569 222 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 ZBED1O96006 694 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 HMGB2P26583 209 aaKnown RBP13.19□□□□□ -0.3
LIG1-201ENST00000263274 CCDC15Q0P6D6 951 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 SLC35B2Q8TB61 432 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 INPP5DQ92835 1189 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 MIS12Q9H081 205 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 ASCC2Q9H1I8 757 aaPredicted RBP13.19□□□□□ -0.3
LIG1-201ENST00000263274 AS3MTQ9HBK9 375 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 PDLIM7Q9NR12 457 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 STOML1Q9UBI4 398 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 SNCAIPQ9Y6H5 919 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 LY75O60449 1722 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 OGTO15294 1046 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 NVLO15381 856 aaKnown RBP13.19□□□□□ -0.3
LIG1-201ENST00000263274 ITGB3P05106 788 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 ABL2P42684 1182 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 LRRC36Q1X8D7 754 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 PARP6Q2NL67 630 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 PRPF39Q86UA1 669 aaKnown RBP13.19□□□□□ -0.3
LIG1-201ENST00000263274 TDRPQ86YL5 185 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 TMEM192Q8IY95 271 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 SLC25A41Q8N5S1 370 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 AGBL3Q8NEM8 1001 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 RPF1Q9H9Y2 349 aaKnown RBP13.19□□□□□ -0.3
LIG1-201ENST00000263274 ZC3H7BQ9UGR2 993 aaKnown RBP13.19□□□□□ -0.3
LIG1-201ENST00000263274 NUMBLQ9Y6R0 609 aa13.19□□□□□ -0.3
LIG1-201ENST00000263274 SYNJ2BP-COX16A0A087WUM0 186 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 FCHO1O14526 889 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 FKBP1CQ5VVH2 108 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 EEF1DP3Q658K8 133 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 MAB21L3Q8N8X9 362 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 CCDC110Q8TBZ0 833 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 DHX33Q9H6R0 707 aaKnown RBP13.18□□□□□ -0.3
LIG1-201ENST00000263274 SMYD3Q9H7B4 428 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 COX16Q9P0S2 106 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 ZFATQ9P243 1243 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 NR2E3Q9Y5X4 410 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 SPATA31C2B4DYI2 1134 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 MED7O43513 233 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 SERPINB4P48594 390 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 CLCN3P51790 818 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 CHI3L2Q15782 390 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 SNX30Q5VWJ9 437 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 PPP1R2P3Q6NXS1 205 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 ADGRD1Q6QNK2 874 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 RELL1Q8IUW5 271 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 WDR49Q8IV35 697 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 NUDCD3Q8IVD9 361 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 C7orf31Q8N865 590 aa13.18□□□□□ -0.3
LIG1-201ENST00000263274 TMEM174Q8WUU8 243 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms