RNA–Protein interactions for RNA: ENST00000262396.10

TRAF4-202, Transcript of TNF receptor associated factor 4, humanhuman

TSL 1 (best) BASIC

Gene TRAF4, Length 683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-202ENST00000262396 USP46P62068 366 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 CREB5Q02930 508 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 CUL4BQ13620 913 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 NCOA4Q13772 614 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 SF3A2Q15428 464 aaKnown RBP13.02□□□□□ -0.33
TRAF4-202ENST00000262396 CEP135Q66GS9 1140 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 CNNM4Q6P4Q7 775 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 EPM2AIP1Q7L775 607 aaPredicted RBP13.02□□□□□ -0.33
TRAF4-202ENST00000262396 SYT13Q7L8C5 426 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 PGBD3Q8N328 593 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 RIN3Q8TB24 985 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 SNX21Q969T3 373 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 IMPG2Q9BZV3 1241 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 ZNF518BQ9C0D4 1074 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 DPEP3Q9H4B8 488 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 GCNT4Q9P109 453 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 SERTAD1Q9UHV2 236 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 PCDHA7Q9UN72 937 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 COL4A2P08572 1712 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 WDR87Q6ZQQ6 2873 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.01□□□□□ -0.33
TRAF4-202ENST00000262396 SCAMP3O14828 347 aaKnown RBP13.01□□□□□ -0.33
TRAF4-202ENST00000262396 MAP3K13O43283 966 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 CALUO43852 315 aaPredicted RBP13.01□□□□□ -0.33
TRAF4-202ENST00000262396 GDF9O60383 454 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 EPN2O95208 641 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 TGM1P22735 817 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 HOXD13P35453 343 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 CASP4P49662 377 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 NOP14P78316 857 aaKnown RBP13.01□□□□□ -0.33
TRAF4-202ENST00000262396 PREPLQ4J6C6 727 aaPredicted RBP13.01□□□□□ -0.33
TRAF4-202ENST00000262396 HECTD3Q5T447 861 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 RESP18Q5W5W9 173 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 NAIF1Q69YI7 327 aaPredicted RBP13.01□□□□□ -0.33
TRAF4-202ENST00000262396 ANO7Q6IWH7 933 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 C11orf74Q86VG3 221 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 GRAMD1CQ8IYS0 662 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 CCDC33Q8N5R6 958 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 CCDC150Q8NCX0 1101 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 CCDC34Q96HJ3 373 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 SMYD3Q9H7B4 428 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 DMAP1Q9NPF5 467 aaPredicted RBP13.01□□□□□ -0.33
TRAF4-202ENST00000262396 VPS45Q9NRW7 570 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 POLR3BQ9NW08 1133 aaPredicted RBP13.01□□□□□ -0.33
TRAF4-202ENST00000262396 TBC1D14Q9P2M4 693 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 INVSQ9Y283 1065 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 PCDHGA5Q9Y5G8 931 aa13.01□□□□□ -0.33
TRAF4-202ENST00000262396 ZNF638Q14966 1978 aaKnown RBP13.01□□□□□ -0.33
TRAF4-202ENST00000262396 AP1G2O75843 785 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 STAU1O95793 577 aaKnown RBP13□□□□□ -0.33
TRAF4-202ENST00000262396 SLFN14P0C7P3 912 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 ZNF806P0C7X5 589 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 IRF1P10914 325 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 ADH5P11766 374 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 TCF3P15923 654 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 HOXC13P31276 330 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 MPLP40238 635 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 PIK3CAP42336 1068 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 RAP1GAPP47736 663 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 CDH8P55286 799 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 SLC7A9P82251 487 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 DNM1Q05193 864 aaKnown RBP13□□□□□ -0.33
TRAF4-202ENST00000262396 GOLGA8FQ08AF8 430 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 GOLGA8DPQ0D2H9 430 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 DHCR24Q15392 516 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 SMARCD1Q96GM5 515 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 SPACA7Q96KW9 195 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 PNKPQ96T60 521 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 TTLL2Q9BWV7 592 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 B3GNT5Q9BYG0 378 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 TPSD1Q9BZJ3 242 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 POLMQ9NP87 494 aaPredicted RBP13□□□□□ -0.33
TRAF4-202ENST00000262396 ARHGEF4Q9NR80 690 aa13□□□□□ -0.33
TRAF4-202ENST00000262396 CHORDC1Q9UHD1 332 aaPredicted RBP13□□□□□ -0.33
TRAF4-202ENST00000262396 TBC1D3BA6NDS4 549 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 LRRIQ3A6PVS8 624 aaPredicted RBP12.99□□□□□ -0.33
TRAF4-202ENST00000262396 CAVIN2O95810 425 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 KRT13P13646 458 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 TIE1P35590 1138 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 GAD2Q05329 585 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 KDSRQ06136 332 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 BMT2Q1RMZ1 405 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 SGSM1Q2NKQ1 1148 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 ANO4Q32M45 955 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 PLK5Q496M5 336 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 EOGTQ5NDL2 527 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 RNF43Q68DV7 783 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 LIMS2Q7Z4I7 341 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 ACOT1Q86TX2 421 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 FAM35AQ86V20 835 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 C12orf56Q8IXR9 622 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 OVCA2Q8WZ82 227 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 ZNF516Q92618 1163 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 JAKMIP2Q96AA8 810 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 SPATA32Q96LK8 384 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 RNF38Q9H0F5 515 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 MMRN2Q9H8L6 949 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.99□□□□□ -0.332e-6■■■■■ 58.1
TRAF4-202ENST00000262396 KRT82Q9NSB4 513 aa12.99□□□□□ -0.33
TRAF4-202ENST00000262396 USP25Q9UHP3 1055 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms