RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 CNBD2Q96M20 576 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 XAB2Q9HCS7 855 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 PIM2Q9P1W9 311 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 XPO1O14980 1071 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ALADP13716 330 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MRPS35P82673 323 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SLC45A4Q5BKX6 768 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SLC17A7Q9P2U7 560 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 DCCP43146 1447 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ROBO3Q96MS0 1386 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SPDYE2BA6NHP3 402 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 LIASO43766 372 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SEC24DO94855 1032 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 NPTXRO95502 500 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SPDYE6P0CI01 402 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 PLOD1Q02809 727 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SLC34A1Q06495 639 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SLC1A5Q15758 541 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 LACTB2Q53H82 288 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 KCTD17Q8N5Z5 321 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 NETO2Q8NC67 525 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SH3GL3Q99963 347 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 M0QZ92 97 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SNUPNO95149 360 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MAPTP10636 758 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 GLRBP48167 497 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ARL13BQ3SXY8 428 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 AKT1S1Q96B36 256 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SLC10A4Q96EP9 437 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MRPL1Q9BYD6 325 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 RNPEPL1Q9HAU8 725 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 USP18Q9UMW8 372 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ARHGAP26Q9UNA1 814 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 BCL9LQ86UU0 1499 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 UMODL1Q5DID0 1318 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TGM2P21980 687 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ITGA9Q13797 1035 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 IYDQ6PHW0 289 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TMEM161BQ8NDZ6 487 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 FAM13CQ8NE31 585 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 GDPD5Q8WTR4 605 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MRPL46Q9H2W6 279 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 C17orf75Q9HAS0 396 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 PCDHA2Q9Y5H9 948 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MRPL42Q9Y6G3 142 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SDR42E2A6NKP2 422 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 DFFAO00273 331 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MYL3P08590 195 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 CALB2P22676 271 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 NUDT2P50583 147 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 EN1Q05925 392 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TTLL4Q14679 1199 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 STRA8Q7Z7C7 330 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MYLK4Q86YV6 388 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 UNC45BQ8IWX7 931 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 OLFM3Q96PB7 478 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TBC1D10AQ9BXI6 508 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MYOZ2Q9NPC6 264 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 RNF103-CHMP3A0A140T963 221 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 KLHL2O95198 593 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 LSM8O95777 96 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 JCHAINP01591 159 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 DPEP1P16444 411 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SPRP35270 261 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ARPP19P56211 112 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MMRN1Q13201 1228 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 USP10Q14694 798 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 FASTKD3Q14CZ7 662 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 N4BP2L1Q5TBK1 243 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 FOXR2Q6PJQ5 311 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 LRRC74BQ6ZQY2 392 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SH3BP5LQ7L8J4 393 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TEX2Q8IWB9 1127 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 CPB2Q96IY4 423 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 UPF3AQ9H1J1 476 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TASP1Q9H6P5 420 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 CDY2AQ9Y6F7 541 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 CDY1Q9Y6F8 540 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 LAMB4A4D0S4 1761 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 FAM237BA0A1B0GVD1 139 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SERPINB5P36952 375 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 C15orf59Q2T9L4 293 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 DNAL1Q4LDG9 190 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 FAM131BQ86XD5 332 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 C4orf19Q8IY42 314 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 FITM2Q8N6M3 262 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ATP6V1E2Q96A05 226 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SLITRK1Q96PX8 696 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TAGLN3Q9UI15 199 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TCN1P20061 433 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MPZL3Q6UWV2 235 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TRABD2AQ86V40 505 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ARHGAP18Q8N392 663 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 PPCSQ9HAB8 311 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 LRRC4CQ9HCJ2 640 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 DMAC2Q9NW81 257 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 DPP3Q9NY33 737 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ANGPTL3Q9Y5C1 460 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TPST1O60507 370 aa4.78□□□□□ -1.64
VPS13C-201ENST00000249837 FAM155BO75949 473 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms