RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 NUP93Q8N1F7 819 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 UBXN6Q9BZV1 441 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 DZANK1Q9NVP4 752 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 MAGED2Q9UNF1 606 aaPredicted RBP28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 MTCL1Q9Y4B5 1905 aaKnown RBP28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 E5RJQ4 531 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 GABBR2O75899 941 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 TKTL1P51854 596 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 USP46P62068 366 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 ADAM15Q13444 863 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 CCDC85BQ15834 202 aaPredicted RBP28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 TAF12Q16514 161 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 RAD9BQ6WBX8 426 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 MMS22LQ6ZRQ5 1243 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 ERICH1Q86X53 443 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 STK32AQ8WU08 396 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 KCTD13Q8WZ19 329 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 HSFY1Q96LI6 401 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 C11orf70Q9BRQ4 267 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 SLC4A5Q9BY07 1137 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 ZDHHC7Q9NXF8 308 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 CLDND1Q9NY35 253 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 NAGPAQ9UK23 515 aa28.72■■■□□ 2.19
CHMP4B-201ENST00000217402 PATJQ8NI35 1801 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 REV3LO60673 3130 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 CCDC122Q5T0U0 273 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 ACAD10Q6JQN1 1059 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 RTL10Q7L3V2 364 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 SIX6OS1Q8N1H7 587 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 ELMOD1Q8N336 334 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 CCDC112Q8NEF3 446 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 FEZF2Q8TBJ5 459 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 IPO4Q8TEX9 1081 aaKnown RBP28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 SFXN1Q9H9B4 322 aa28.71■■■□□ 2.19
CHMP4B-201ENST00000217402 ERBB2P04626 1255 aa28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 HNRNPA1P09651 372 aaKnown RBP eCLIP28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 HOXA9P31269 272 aa28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 CYLC1P35663 651 aaPredicted RBP28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 RAB41Q5JT25 222 aa28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 CYP4A22Q5TCH4 519 aa28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 ALKBH5Q6P6C2 394 aaKnown RBP28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 TMEM184AQ6ZMB5 413 aa28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 CCDC170Q8IYT3 715 aa28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 MSANTD4Q8NCY6 345 aa28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 APOL5Q9BWW9 433 aa28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 MIS12Q9H081 205 aa28.7■■■□□ 2.19
CHMP4B-201ENST00000217402 CCDC195A0A1B0GUA6 201 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 GZMAP12544 262 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 TMC5Q6UXY8 1006 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 DNAJB7Q7Z6W7 309 aaPredicted RBP28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 ITIH5Q86UX2 942 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 PPM1EQ8WY54 764 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 PSMG2Q969U7 264 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 CEP295NLQ96MC4 621 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 RTN2O75298 545 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 TBX10O75333 385 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 FTLP02792 175 aaPredicted RBP28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 CSH1P0DML2 217 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 CSH2P0DML3 217 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 MMP8P22894 467 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 ACADSBP45954 432 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 RPL34P49207 117 aaKnown RBP28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 CCZ1BP86790 482 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 CCZ1P86791 482 aaPredicted RBP28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 RARS2Q5T160 578 aaKnown RBP28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 ANKRD54Q6NXT1 300 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 TMEM110Q86TL2 294 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 PHF13Q86YI8 300 aaPredicted RBP28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 ZNF512Q96ME7 567 aaPredicted RBP28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 ZNF830Q96NB3 372 aaPredicted RBP28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 ULBP1Q9BZM6 244 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 ADAM22Q9P0K1 906 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 NENFQ9UMX5 172 aa28.69■■■□□ 2.18
CHMP4B-201ENST00000217402 XYLBO75191 536 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 RTN3O95197 1032 aaPredicted RBP28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 NDUFA10O95299 355 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 HMGA1P17096 107 aaKnown RBP28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 DLX2Q07687 328 aaPredicted RBP28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 MON1BQ7L1V2 547 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 SCUBE3Q8IX30 993 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 CLEC4CQ8WTT0 213 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 ZNF707Q96C28 371 aaPredicted RBP28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 C18orf8Q96DM3 657 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 PRKD2Q9BZL6 878 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 CYLDQ9NQC7 956 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 HCFC1R1Q9NWW0 138 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 ASB3Q9Y575 518 aa28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 EPN1Q9Y6I3 576 aaPredicted RBP28.68■■■□□ 2.18
CHMP4B-201ENST00000217402 ZNF263O14978 683 aa28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 NCK2O43639 380 aa28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 NRDCO43847 1150 aa28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 USP17L7P0C7H9 530 aa28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 YWHAQP27348 245 aa28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 CTC1Q2NKJ3 1217 aa28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 PHLDB2Q86SQ0 1253 aa28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 NDRG1Q92597 394 aaKnown RBP28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 CORO1BQ9BR76 489 aa28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 CLEC1BQ9P126 229 aa28.67■■■□□ 2.18
CHMP4B-201ENST00000217402 PAPSS1O43252 624 aaPredicted RBP28.66■■■□□ 2.18
CHMP4B-201ENST00000217402 SNX16P57768 344 aa28.66■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms