RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 TP53INP1Q96A56 240 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 LBHD1Q9BQE6 289 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 CASS4Q9NQ75 786 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF711Q9Y462 761 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 CLUHO75153 1309 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 IGSF1Q8N6C5 1336 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 LRRC53A6NM62 1247 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 DNALI1O14645 258 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 MGRN1O60291 552 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 VPS26AO75436 327 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 GSPT1P15170 499 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 TCP10Q12799 353 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 RPRD1AQ96P16 312 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 TMEM216Q9P0N5 145 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 SDR42E2A6NKP2 422 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 NBNO60934 754 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 FTLP02792 175 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PDGFRBP09619 1106 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 CRABP2P29373 138 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ATN1P54259 1190 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 SMYD5Q6GMV2 418 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PRPF39Q86UA1 669 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 GRPEL2Q8TAA5 225 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 WNK4Q96J92 1243 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 SEC16BQ96JE7 1060 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 DKK3Q9UBP4 350 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 AGO2Q9UKV8 859 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 CRYL1Q9Y2S2 319 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 H7C4K7 107 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 TGM2P21980 687 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 FASP25445 335 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 DCKP27707 260 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 SLCO1A2P46721 670 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 GRM4Q14833 912 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 TCHHL1Q5QJ38 904 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 NOTUMQ6P988 496 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 SRBD1Q8N5C6 995 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ZFYVE19Q96K21 471 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 TMEM106CQ9BVX2 250 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 KCNN4O15554 427 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 UBXN2AP68543 259 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 NFX1Q12986 1120 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 INO80DQ53TQ3 878 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 MDH1BQ5I0G3 518 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 DEPDC4Q8N2C3 294 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 C2orf69Q8N8R5 385 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 RORBQ92753 470 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 B3GALT6Q96L58 329 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ANKEF1Q9NU02 776 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PCDH10Q9P2E7 1040 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 BCORL1Q5H9F3 1711 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 RGL2O15211 777 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 KPNA6O60684 536 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 FKBP9O95302 570 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 TPBGLP0DKB5 382 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 RARGP13631 454 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 CES1P23141 567 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ATP6AP1LQ52LC2 224 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ARHGAP15Q53QZ3 475 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 XKR3Q5GH77 459 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 EXOC3L1Q86VI1 746 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 KYQ8NBH2 561 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PRMT1Q99873 361 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 INTS13Q9NVM9 706 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 RPS6KA6Q9UK32 745 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 GHRP10912 638 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ADSLP30566 484 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 PIK3CBP42338 1070 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ACLYP53396 1101 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 DRAP1Q14919 205 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ZNF394Q53GI3 561 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 EAPPQ56P03 285 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 TNFAIP8L3Q5GJ75 292 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ESRP1Q6NXG1 681 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 CAPN12Q6ZSI9 719 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 LRRC47Q8N1G4 583 aaKnown RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 LZTR1Q8N653 840 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 SLC30A5Q8TAD4 765 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 EAF2Q96CJ1 260 aaPredicted RBP6.28□□□□□ -1.4
VPS13D-201ENST00000011700 KLHL11Q9NVR0 708 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 SLC30A1Q9Y6M5 507 aa6.28□□□□□ -1.4
VPS13D-201ENST00000011700 ZC3H4Q9UPT8 1303 aaKnown RBP6.27□□□□□ -1.4
VPS13D-201ENST00000011700 UBA6A0AVT1 1052 aaPredicted RBP6.27□□□□□ -1.4
VPS13D-201ENST00000011700 TRDMT1O14717 391 aaKnown RBP6.27□□□□□ -1.4
VPS13D-201ENST00000011700 PSMD4P55036 377 aaKnown RBP6.27□□□□□ -1.4
VPS13D-201ENST00000011700 CSNK2BP67870 215 aa6.27□□□□□ -1.4
VPS13D-201ENST00000011700 COASYQ13057 564 aa6.27□□□□□ -1.4
VPS13D-201ENST00000011700 GANCQ8TET4 914 aa6.27□□□□□ -1.4
VPS13D-201ENST00000011700 C17orf80Q9BSJ5 609 aa6.27□□□□□ -1.4
VPS13D-201ENST00000011700 MAGEE1Q9HCI5 957 aa6.27□□□□□ -1.4
VPS13D-201ENST00000011700 UBAP1Q9NZ09 502 aa6.27□□□□□ -1.4
VPS13D-201ENST00000011700 CCDC154A6NI56 674 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CXCR5P32302 372 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 PTK7Q13308 1070 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 C7orf57Q8NEG2 295 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FNIP1Q8TF40 1166 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CENPTQ96BT3 561 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 DCTN4Q9UJW0 460 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 DISP1Q96F81 1524 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms