RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Tet3Q8BG87 1668 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ms4a14A0A087WSD2 1232 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Vwa5b1A9Z1V5 1215 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Birc5O70201 140 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 AlbP07724 608 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Slc11a2P49282 568 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Fam172aQ3TNH5 417 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Olfr8Q60892 310 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tssk3Q9D2E1 268 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Fam171a1A2ATK9 892 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ppp1r36D3Z0R2 411 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Sptlc1O35704 473 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 RarbP22605 482 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Phactr1Q2M3X8 580 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Zbtb41Q811F1 908 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Zfp418Q8BFS8 652 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 SybuQ8BHS8 665 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Rps6kc1Q8BLK9 1056 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Taf2Q8C176 1104 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ube4bQ9ES00 1173 aa16.13■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ifi206G3UZV2 921 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Hcn2O88703 863 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gxylt1Q3UHH8 404 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 NostrinQ6WKZ7 506 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Znf507Q6ZPY5 941 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Dnajc6Q80TZ3 938 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Mrps5Q99N87 432 aaKnown RBP16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ubxn11Q9D572 484 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Akap17bA2A3V1 959 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pdzd8B9EJ80 1147 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ccdc8D3YZV8 685 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 RargP18911 458 aaKnown RBP16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Sar1aP36536 198 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pdk1Q8BFP9 434 aaKnown RBP16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Thnsl1Q8BH55 747 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tada2aQ8CHV6 443 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 F11Q91Y47 624 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ndufaf7Q9CWG8 436 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 M1apQ9Z0E1 529 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gm2237E9Q501 211 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gm3591K7N6X2 186 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gsg1l2M0QWL6 290 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cyp2c39P56656 490 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pnpla5Q32LZ8 432 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Dpysl3Q62188 570 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Stx3Q64704 289 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pak5Q8C015 719 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Prpf39Q8K2Z2 665 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Csde1Q91W50 798 aaKnown RBP16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Hars2Q99KK9 505 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Capn7Q9R1S8 813 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Zbtb18Q9WUK6 522 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gm21973F6WEZ7 68 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 VcpQ01853 806 aaKnown RBP16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Afg1lQ3V384 480 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Galnt5Q8C102 930 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Bcas3Q8CCN5 928 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Rmnd1Q8CI78 450 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Fam83aQ8K2P2 436 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Wdr98Q8VC42 657 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Alg9Q8VDI9 611 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ergic2Q9CR89 377 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Dgcr8Q9EQM6 773 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 PalmdQ9JHU2 551 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Atp11cQ9QZW0 1129 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 RecqlQ9Z129 648 aa16.12■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Bcl9lQ67FY2 1494 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Apol11bE9PUZ0 337 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 1700011I03RikE9PYL8 271 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cops5O35864 334 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pde9aO70628 534 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Pcyt1aP49586 367 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ccdc127Q3TC33 260 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Grik4Q8BMF5 956 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Brat1Q8C3R1 822 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 PnkpQ9JLV6 522 aaKnown RBP16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Hao1Q9WU19 370 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Kcnd2Q9Z0V2 630 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ggt5Q9Z2A9 573 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 PtproE9Q612 1226 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Gm3402K7N5P2 326 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Scg3P47867 471 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Kpnb1P70168 876 aaKnown RBP16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ogfod1Q3U0K8 545 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Srd5a1Q68FF9 255 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tmc8Q7TN58 722 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Olfr23Q7TRX4 325 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tgif2lx2Q8K5B9 231 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Trap1Q9CQN1 706 aaKnown RBP16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Siglec1Q62230 1695 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Cyp2j6O54750 501 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 JchainP01592 159 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Sstr1P30873 391 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Chi3l1Q61362 389 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Kcnv1Q8BZN2 503 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 BlmhQ8R016 455 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Tesk2Q8VCT9 570 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Ino80bQ99PT3 375 aaKnown RBP16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Txndc9Q9CQ79 226 aa16.11■□□□□ 0.17
Ccdc88b-201ENSMUST00000113440 Iqcj-Schip1A0A088MLT8 559 aa16.1■□□□□ 0.17
Retrieved 100 of 22,080 RNA–protein pairs in 31.5 ms