RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Ccdc80Q8R2G6 949 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Pomgnt1Q91X88 660 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Socs4Q91ZA6 436 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Cpt1bQ924X2 772 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Anxa9Q9JHQ0 345 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Ms4a14A0A087WSD2 1232 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Tcp11x2A2AEI7 503 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Ptpn3A2ALK8 913 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Rtn2O70622 471 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Nos2P29477 1144 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Hmgcs2P54869 508 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Q3UE31 404 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Lrrc14bQ3UJB3 510 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Xlr3cQ61806 226 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Epn3Q91W69 636 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Dnajc9Q91WN1 259 aaKnown RBP17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Nek8Q91ZR4 698 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Xpo5Q924C1 1204 aaKnown RBP17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Nme5Q99MH5 211 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Caln1Q9JJG7 219 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Fut2Q9JL27 347 aa17.12■□□□□ 0.33
Shh-201ENSMUST00000002708 Ccdc170D3YXL0 722 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Sept7O55131 436 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Drg1P32233 367 aaKnown RBP17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Arl4cP61208 192 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Gsdmc4Q3TR54 480 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Sez6lQ6P1D5 963 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Upb1Q8VC97 393 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Trpv6Q91WD2 767 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 MlklQ9D2Y4 472 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Ror2Q9Z138 944 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Atp6v0a1Q9Z1G4 839 aaKnown RBP17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Arid2E9Q7E2 1828 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Raph1F2Z3U3 1266 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Kbtbd2G3X9X1 623 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 YwhagP61982 247 aaKnown RBP17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Foxd4Q60688 444 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Eif2dQ61211 570 aaKnown RBP17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 PrcpQ7TMR0 491 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Nlrp4aQ8BU40 982 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Acvr1cQ8K348 493 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Tasp1Q8R1G1 420 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Hkdc1Q91W97 915 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Me2Q99KE1 589 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Cttnbp2nlQ99LJ0 638 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Rpa3Q9CQ71 121 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Aldh1b1Q9CZS1 519 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Sgf29Q9DA08 293 aaKnown RBP17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Ngly1Q9JI78 651 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Nup210lQ9D2F7 1881 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Bmpr2O35607 1038 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Znf746Q3U133 652 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Btbd10Q80X66 475 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Olfr385Q8VGT1 312 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 IrgqQ8VIM9 583 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 TfQ921I1 697 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Lrp8Q924X6 996 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Mphosph6Q9D1Q1 161 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 Hes6Q9JHE6 224 aa17.11■□□□□ 0.33
Shh-201ENSMUST00000002708 DldO08749 509 aaKnown RBP17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 KitP05532 979 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Slc1a2P43006 572 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 YwhaeP62259 255 aaKnown RBP17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Ccdc127Q3TC33 260 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Kctd8Q50H33 476 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Atp4aQ64436 1033 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Rpf1Q7TND5 349 aaKnown RBP17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Vmn2r43Q80Z08 845 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Qsox1Q8BND5 748 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Hdac7Q8C2B3 938 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Mcoln2Q8K595 566 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Dhx36Q8VHK9 1001 aaKnown RBP17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Setd3Q91WC0 594 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Q9CQC3 228 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Adgrf4Q9D2L6 698 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Fam155bA2BDP1 471 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Vmn2r104E9Q2J5 860 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 CfhP06909 1234 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Fcer2P20693 331 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Gja8P28236 440 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 SftpdP50404 374 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Cntn3Q07409 1028 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Luc7l3Q5SUF2 432 aaKnown RBP17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Zbtb5Q7TQG0 670 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Phka2Q8BWJ3 1235 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Rmi1Q9D4G9 616 aa17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Sun1Q9D666 913 aaKnown RBP17.1■□□□□ 0.33
Shh-201ENSMUST00000002708 Cntnap4Q99P47 1310 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Scn1aA2APX8 2009 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Lrrc73B2RWC4 316 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 CidebO70303 219 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Glt6d1Q2NKH9 311 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Tars2Q3UQ84 723 aaKnown RBP17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Nuak1Q641K5 658 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Tmcc1Q69ZZ6 649 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 OcrlQ6NVF0 900 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Mbtd1Q6P5G3 631 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Klhl17Q6TDP3 640 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 Trpv1Q704Y3 839 aa17.09■□□□□ 0.33
Shh-201ENSMUST00000002708 FsbpQ8BKE5 299 aa17.09■□□□□ 0.33
Retrieved 100 of 22,080 RNA–protein pairs in 67.6 ms