RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YCR101CP25607 182 aa1□□□□□ -2.25
UPF3YGR072W UBC5P15732 148 aa0.99□□□□□ -2.25
UPF3YGR072W YBR072C-AQ3E794 53 aa0.99□□□□□ -2.25
UPF3YGR072W YIL086CP40503 102 aa0.97□□□□□ -2.25
UPF3YGR072W COX12Q01519 83 aa0.97□□□□□ -2.25
UPF3YGR072W YDR010CQ12426 110 aa0.97□□□□□ -2.25
UPF3YGR072W COX19Q3E731 98 aa0.97□□□□□ -2.25
UPF3YGR072W FYV7Q12247 151 aa0.96□□□□□ -2.26
UPF3YGR072W YPL038W-AQ3E7B4 63 aa0.96□□□□□ -2.26
UPF3YGR072W GEA1P47102 1408 aaPredicted RBP0.96□□□□□ -2.26
UPF3YGR072W YRF1-6P53819 1859 aa0.95□□□□□ -2.26
UPF3YGR072W AUA1P32450 94 aa0.95□□□□□ -2.26
UPF3YGR072W SHU1P38751 150 aa0.95□□□□□ -2.26
UPF3YGR072W MIX14Q04341 121 aa0.95□□□□□ -2.26
UPF3YGR072W KRE5P22023 1365 aa0.95□□□□□ -2.26
UPF3YGR072W SEC16P48415 2195 aaKnown RBP0.94□□□□□ -2.26
UPF3YGR072W YLR255CO13574 117 aa0.94□□□□□ -2.26
UPF3YGR072W YHR173CP38864 112 aa0.94□□□□□ -2.26
UPF3YGR072W URA2P07259 2214 aaKnown RBP0.94□□□□□ -2.26
UPF3YGR072W TY3B-IQ7LHG5 1498 aaKnown RBP0.93□□□□□ -2.26
UPF3YGR072W SEC7P11075 2009 aaKnown RBP0.93□□□□□ -2.26
UPF3YGR072W TOP2P06786 1428 aaKnown RBP0.93□□□□□ -2.26
UPF3YGR072W MPC2P38857 129 aa0.93□□□□□ -2.26
UPF3YGR072W YCR095W-AQ3E787 52 aa0.93□□□□□ -2.26
UPF3YGR072W URB1P34241 1764 aaKnown RBP0.93□□□□□ -2.26
UPF3YGR072W GCV3P39726 170 aaPredicted RBP0.92□□□□□ -2.26
UPF3YGR072W SNA2P56508 79 aa0.92□□□□□ -2.26
UPF3YGR072W YDR210WQ03482 75 aa0.92□□□□□ -2.26
UPF3YGR072W GEA2P39993 1459 aaKnown RBP0.92□□□□□ -2.26
UPF3YGR072W MRP17P28778 131 aa0.91□□□□□ -2.26
UPF3YGR072W TY4B-HP0C2J7 1802 aa0.91□□□□□ -2.26
UPF3YGR072W SRB8P25648 1427 aa0.9□□□□□ -2.26
UPF3YGR072W PDR11P40550 1411 aa0.9□□□□□ -2.26
UPF3YGR072W YHL005CP38752 130 aa0.9□□□□□ -2.27
UPF3YGR072W KSH1Q8TGJ3 72 aa0.9□□□□□ -2.27
UPF3YGR072W EMC5P40540 141 aa0.88□□□□□ -2.27
UPF3YGR072W RPS29BP41058 56 aaKnown RBP0.88□□□□□ -2.27
UPF3YGR072W PAU5P43575 122 aa0.88□□□□□ -2.27
UPF3YGR072W RSM19P53733 91 aaPredicted RBP0.88□□□□□ -2.27
UPF3YGR072W MRX7P53869 86 aa0.88□□□□□ -2.27
UPF3YGR072W ROX3P25046 220 aa0.87□□□□□ -2.27
UPF3YGR072W REV3P14284 1504 aa0.87□□□□□ -2.27
UPF3YGR072W CAT8P39113 1433 aa0.87□□□□□ -2.27
UPF3YGR072W BUD4P47136 1447 aa0.87□□□□□ -2.27
UPF3YGR072W BPT1P14772 1559 aa0.87□□□□□ -2.27
UPF3YGR072W YBR292CP38357 123 aa0.86□□□□□ -2.27
UPF3YGR072W ICY1Q04329 127 aa0.86□□□□□ -2.27
UPF3YGR072W ZEO1Q08245 113 aa0.86□□□□□ -2.27
UPF3YGR072W BNI1P41832 1953 aa0.85□□□□□ -2.27
UPF3YGR072W AIM19P40502 157 aa0.85□□□□□ -2.27
UPF3YGR072W YOR289WQ12012 251 aaPredicted RBP0.85□□□□□ -2.27
UPF3YGR072W YOL164W-AQ3E7A5 60 aa0.85□□□□□ -2.27
UPF3YGR072W SSN2P38931 1420 aa0.84□□□□□ -2.27
UPF3YGR072W PAU6P0CE90 120 aa0.84□□□□□ -2.27
UPF3YGR072W PAU18P0CE91 120 aa0.84□□□□□ -2.27
UPF3YGR072W HMRA1P0CY11 126 aa0.84□□□□□ -2.27
UPF3YGR072W MRPL38P35996 138 aaPredicted RBP0.84□□□□□ -2.27
UPF3YGR072W PAU20Q08322 120 aa0.84□□□□□ -2.27
UPF3YGR072W YPL225WQ08971 146 aaKnown RBP0.84□□□□□ -2.27
UPF3YGR072W RPS11AP0CX47 156 aaKnown RBP0.83□□□□□ -2.28
UPF3YGR072W RPS11BP0CX48 156 aaKnown RBP0.83□□□□□ -2.28
UPF3YGR072W PRP8P33334 2413 aaKnown RBP0.83□□□□□ -2.28
UPF3YGR072W BRR2P32639 2163 aaKnown RBP0.81□□□□□ -2.28
UPF3YGR072W YBL071CP38185 102 aa0.81□□□□□ -2.28
UPF3YGR072W YNR034W-AQ3E841 98 aa0.81□□□□□ -2.28
UPF3YGR072W PAU1P0CE88 120 aa0.8□□□□□ -2.28
UPF3YGR072W PAU14P0CE89 120 aa0.8□□□□□ -2.28
UPF3YGR072W PAU8P0CE92 120 aa0.8□□□□□ -2.28
UPF3YGR072W PAU11P0CE93 120 aa0.8□□□□□ -2.28
UPF3YGR072W PAU13P38725 120 aa0.8□□□□□ -2.28
UPF3YGR072W PAU10Q03050 120 aa0.8□□□□□ -2.28
UPF3YGR072W PAU9Q3E770 120 aa0.8□□□□□ -2.28
UPF3YGR072W RSF2P46974 1380 aa0.8□□□□□ -2.28
UPF3YGR072W BLM10P43583 2143 aa0.79□□□□□ -2.28
UPF3YGR072W NTE1Q04958 1679 aa0.79□□□□□ -2.28
UPF3YGR072W MSL1P40567 111 aaPredicted RBP0.79□□□□□ -2.28
UPF3YGR072W SNF2P22082 1703 aa0.78□□□□□ -2.28
UPF3YGR072W SNU13P39990 126 aaKnown RBP0.78□□□□□ -2.28
UPF3YGR072W RSM18P40033 138 aa0.78□□□□□ -2.28
UPF3YGR072W PAU4P53427 120 aa0.77□□□□□ -2.29
UPF3YGR072W NHP10Q03435 203 aa0.77□□□□□ -2.29
UPF3YGR072W SUS1Q6WNK7 96 aa0.77□□□□□ -2.29
UPF3YGR072W SPC1P46965 94 aa0.76□□□□□ -2.29
UPF3YGR072W POL2P21951 2222 aaKnown RBP0.76□□□□□ -2.29
UPF3YGR072W RPA12P32529 125 aaKnown RBP0.75□□□□□ -2.29
UPF3YGR072W RRT15Q3E811 62 aa0.75□□□□□ -2.29
UPF3YGR072W MYO1P08964 1928 aa0.75□□□□□ -2.29
UPF3YGR072W FAS2P19097 1887 aaKnown RBP0.75□□□□□ -2.29
UPF3YGR072W PDX3P38075 228 aaKnown RBP0.74□□□□□ -2.29
UPF3YGR072W YNL190WP53872 204 aa0.73□□□□□ -2.29
UPF3YGR072W YDR029WQ12111 104 aa0.73□□□□□ -2.29
UPF3YGR072W RIM15P43565 1770 aa0.72□□□□□ -2.29
UPF3YGR072W YRF1-1P0CX20 1796 aa0.71□□□□□ -2.3
UPF3YGR072W YRF1-5P0CX21 1796 aa0.71□□□□□ -2.3
UPF3YGR072W YRF1-8P0CX22 1796 aa0.71□□□□□ -2.3
UPF3YGR072W YNL198CP40166 100 aa0.71□□□□□ -2.3
UPF3YGR072W YDR042CQ03205 200 aa0.71□□□□□ -2.3
UPF3YGR072W RPC10P40422 70 aa0.7□□□□□ -2.3
UPF3YGR072W MHF2Q3E829 80 aa0.7□□□□□ -2.3
UPF3YGR072W YRF1-2P40105 1681 aa0.69□□□□□ -2.3
Retrieved 100 of 5,963 RNA–protein pairs in 74.1 ms