RNA–Protein interactions for RNA: NME1

NME1, Transcript of RNA component of RNase MRP, yeastyeast

Gene NME1, Length 340 nt, Biotype snoRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NME1NME1 TY4B-HP0C2J7 1802 aa1.81□□□□□ -2.12
NME1NME1 YIL086CP40503 102 aa1.8□□□□□ -2.12
NME1NME1 GCV3P39726 170 aaPredicted RBP1.78□□□□□ -2.12
NME1NME1 RPS29BP41058 56 aaKnown RBP1.78□□□□□ -2.12
NME1NME1 YOS1Q3E834 85 aa1.78□□□□□ -2.12
NME1NME1 LYS2P07702 1392 aa1.77□□□□□ -2.13
NME1NME1 SRB6P32570 121 aa1.77□□□□□ -2.13
NME1NME1 BLM10P43583 2143 aa1.76□□□□□ -2.13
NME1NME1 SHU1P38751 150 aa1.75□□□□□ -2.13
NME1NME1 MIC10Q96VH5 97 aa1.75□□□□□ -2.13
NME1NME1 YCR101CP25607 182 aa1.73□□□□□ -2.13
NME1NME1 YDR210WQ03482 75 aa1.73□□□□□ -2.13
NME1NME1 BRR2P32639 2163 aaKnown RBP1.73□□□□□ -2.13
NME1NME1 YMR103CQ04436 120 aa1.72□□□□□ -2.13
NME1NME1 RPS12P48589 143 aaKnown RBP1.71□□□□□ -2.14
NME1NME1 YPL038W-AQ3E7B4 63 aa1.71□□□□□ -2.14
NME1NME1 TOP2P06786 1428 aaKnown RBP1.71□□□□□ -2.14
NME1NME1 COX19Q3E731 98 aa1.7□□□□□ -2.14
NME1NME1 YER137CP40083 148 aaKnown RBP1.68□□□□□ -2.14
NME1NME1 YOL164W-AQ3E7A5 60 aa1.68□□□□□ -2.14
NME1NME1 MDS3P53094 1487 aa1.68□□□□□ -2.14
NME1NME1 TSC11P40061 1430 aa1.66□□□□□ -2.14
NME1NME1 UBC4P15731 148 aa1.65□□□□□ -2.15
NME1NME1 YMR090WQ04304 227 aaKnown RBP1.65□□□□□ -2.15
NME1NME1 MPC2P38857 129 aa1.64□□□□□ -2.15
NME1NME1 COX12Q01519 83 aa1.62□□□□□ -2.15
NME1NME1 KRE5P22023 1365 aa1.61□□□□□ -2.15
NME1NME1 YBR090CP38253 122 aa1.59□□□□□ -2.15
NME1NME1 YCR095W-AQ3E787 52 aa1.57□□□□□ -2.16
NME1NME1 TY3B-IQ7LHG5 1498 aaKnown RBP1.56□□□□□ -2.16
NME1NME1 UBC5P15732 148 aa1.56□□□□□ -2.16
NME1NME1 RGI1P40043 161 aaPredicted RBP1.56□□□□□ -2.16
NME1NME1 FAS2P19097 1887 aaKnown RBP1.55□□□□□ -2.16
NME1NME1 MYO1P08964 1928 aa1.52□□□□□ -2.17
NME1NME1 BPT1P14772 1559 aa1.51□□□□□ -2.17
NME1NME1 SRB8P25648 1427 aa1.51□□□□□ -2.17
NME1NME1 MRX7P53869 86 aa1.51□□□□□ -2.17
NME1NME1 POL2P21951 2222 aaKnown RBP1.51□□□□□ -2.17
NME1NME1 SNA2P56508 79 aa1.5□□□□□ -2.17
NME1NME1 MIX14Q04341 121 aa1.5□□□□□ -2.17
NME1NME1 GEA1P47102 1408 aaPredicted RBP1.48□□□□□ -2.17
NME1NME1 RPA12P32529 125 aaKnown RBP1.47□□□□□ -2.17
NME1NME1 PAU5P43575 122 aa1.47□□□□□ -2.17
NME1NME1 RPS11AP0CX47 156 aaKnown RBP1.45□□□□□ -2.18
NME1NME1 RPS11BP0CX48 156 aaKnown RBP1.45□□□□□ -2.18
NME1NME1 PDR11P40550 1411 aa1.44□□□□□ -2.18
NME1NME1 SSN2P38931 1420 aa1.43□□□□□ -2.18
NME1NME1 MRP17P28778 131 aa1.43□□□□□ -2.18
NME1NME1 ICY1Q04329 127 aa1.43□□□□□ -2.18
NME1NME1 ROX3P25046 220 aa1.42□□□□□ -2.18
NME1NME1 MRPL38P35996 138 aaPredicted RBP1.42□□□□□ -2.18
NME1NME1 RSM19P53733 91 aaPredicted RBP1.42□□□□□ -2.18
NME1NME1 PAU6P0CE90 120 aa1.39□□□□□ -2.19
NME1NME1 PAU18P0CE91 120 aa1.39□□□□□ -2.19
NME1NME1 NTE1Q04958 1679 aa1.39□□□□□ -2.19
NME1NME1 YBR292CP38357 123 aa1.38□□□□□ -2.19
NME1NME1 KSH1Q8TGJ3 72 aa1.37□□□□□ -2.19
NME1NME1 PAU20Q08322 120 aa1.34□□□□□ -2.19
NME1NME1 YNR034W-AQ3E841 98 aa1.34□□□□□ -2.19
NME1NME1 RIM15P43565 1770 aa1.34□□□□□ -2.2
NME1NME1 YHL005CP38752 130 aa1.33□□□□□ -2.2
NME1NME1 YNL190WP53872 204 aa1.32□□□□□ -2.2
NME1NME1 GEA2P39993 1459 aaKnown RBP1.31□□□□□ -2.2
NME1NME1 YBL071CP38185 102 aa1.31□□□□□ -2.2
NME1NME1 YOR289WQ12012 251 aaPredicted RBP1.3□□□□□ -2.2
NME1NME1 FYV7Q12247 151 aa1.3□□□□□ -2.2
NME1NME1 REV3P14284 1504 aa1.29□□□□□ -2.2
NME1NME1 AIM19P40502 157 aa1.28□□□□□ -2.2
NME1NME1 EMC5P40540 141 aa1.25□□□□□ -2.21
NME1NME1 RSM18P40033 138 aa1.24□□□□□ -2.21
NME1NME1 YRF1-1P0CX20 1796 aa1.24□□□□□ -2.21
NME1NME1 YRF1-5P0CX21 1796 aa1.24□□□□□ -2.21
NME1NME1 YRF1-8P0CX22 1796 aa1.24□□□□□ -2.21
NME1NME1 YRF1-2P40105 1681 aa1.23□□□□□ -2.21
NME1NME1 HMRA1P0CY11 126 aa1.22□□□□□ -2.21
NME1NME1 BUD4P47136 1447 aa1.22□□□□□ -2.21
NME1NME1 PAU1P0CE88 120 aa1.21□□□□□ -2.22
NME1NME1 PAU14P0CE89 120 aa1.21□□□□□ -2.22
NME1NME1 PAU8P0CE92 120 aa1.21□□□□□ -2.22
NME1NME1 PAU11P0CE93 120 aa1.21□□□□□ -2.22
NME1NME1 PAU13P38725 120 aa1.21□□□□□ -2.22
NME1NME1 PAU10Q03050 120 aa1.21□□□□□ -2.22
NME1NME1 PAU9Q3E770 120 aa1.21□□□□□ -2.22
NME1NME1 CAT8P39113 1433 aa1.19□□□□□ -2.22
NME1NME1 TY1B-BLQ12490 1755 aa1.19□□□□□ -2.22
NME1NME1 YNL198CP40166 100 aa1.16□□□□□ -2.22
NME1NME1 NHP10Q03435 203 aa1.15□□□□□ -2.23
NME1NME1 RPC10P40422 70 aa1.13□□□□□ -2.23
NME1NME1 SPC1P46965 94 aa1.13□□□□□ -2.23
NME1NME1 PAU4P53427 120 aa1.11□□□□□ -2.23
NME1NME1 RSF2P46974 1380 aa1.1□□□□□ -2.23
NME1NME1 TAO3P40468 2376 aa1.1□□□□□ -2.23
NME1NME1 RRT15Q3E811 62 aa1.1□□□□□ -2.23
NME1NME1 MSL1P40567 111 aaPredicted RBP1.02□□□□□ -2.25
NME1NME1 ATX1P38636 73 aa1.01□□□□□ -2.25
NME1NME1 SNU13P39990 126 aaKnown RBP1□□□□□ -2.25
NME1NME1 ZEO1Q08245 113 aa0.99□□□□□ -2.25
NME1NME1 RPL38P49167 78 aaKnown RBP0.98□□□□□ -2.25
NME1NME1 RPA190P10964 1664 aaKnown RBP0.97□□□□□ -2.25
NME1NME1 YNL042W-BQ3E7Z2 85 aa0.95□□□□□ -2.26
Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms