RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 CCR3P51677 355 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 MLLT6P55198 1093 aaPredicted RBP10.96□□□□□ -0.65
SCN1A-222ENST00000642141 DPYDQ12882 1025 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 TAF10Q12962 218 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 KCNB1Q14721 858 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 MTF1Q14872 753 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 ZNF667Q5HYK9 610 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 FSTL4Q6MZW2 842 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 VSTM1Q6UX27 236 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 KRBA2Q6ZNG9 492 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 PRR23BQ6ZRT6 265 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 ACOT1Q86TX2 421 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 SMYD4Q8IYR2 804 aaPredicted RBP10.96□□□□□ -0.65
SCN1A-222ENST00000642141 SPEM1Q8N4L4 309 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 ZBTB44Q8NCP5 570 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 SPATA17Q96L03 361 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 SCAND2PQ9GZW5 306 aaPredicted RBP10.96□□□□□ -0.65
SCN1A-222ENST00000642141 RNF38Q9H0F5 515 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 TRPM5Q9NZQ8 1165 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 GCNT4Q9P109 453 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 CHORDC1Q9UHD1 332 aaPredicted RBP10.96□□□□□ -0.65
SCN1A-222ENST00000642141 SMG5Q9UPR3 1016 aaKnown RBP10.96□□□□□ -0.65
SCN1A-222ENST00000642141 FRMD4BQ9Y2L6 1034 aa10.96□□□□□ -0.65
SCN1A-222ENST00000642141 PATJQ8NI35 1801 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 TRIM66O15016 1216 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 CALUO43852 315 aaPredicted RBP10.95□□□□□ -0.66
SCN1A-222ENST00000642141 CCDC130P13994 396 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 NR2F2P24468 414 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 PIK3CAP42336 1068 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 ID4P47928 161 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 GCLMP48507 274 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 IFNAR2P48551 515 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 CLDN10P78369 228 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 ZXDBP98169 803 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 FAM160A1Q05DH4 1040 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 GRSF1Q12849 480 aaKnown RBP eCLIP10.95□□□□□ -0.66
SCN1A-222ENST00000642141 CCINQ13939 588 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 PPP2R5DQ14738 602 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 ZNF77Q15935 545 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 SGSM1Q2NKQ1 1148 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 DGKKQ5KSL6 1271 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 C1orf220Q5T0J3 134 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 SV2AQ7L0J3 742 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 SLC9A9Q8IVB4 645 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 SCAMP5Q8TAC9 235 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 NELL1Q92832 810 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 ERCC4Q92889 916 aaPredicted RBP10.95□□□□□ -0.66
SCN1A-222ENST00000642141 CCDC47Q96A33 483 aaKnown RBP10.95□□□□□ -0.66
SCN1A-222ENST00000642141 ECT2Q9H8V3 914 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 HMGXB4Q9UGU5 601 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 ZMYM5Q9UJ78 669 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 ATP6V1DQ9Y5K8 247 aa10.95□□□□□ -0.66
SCN1A-222ENST00000642141 KIF26AQ9ULI4 1882 aaPredicted RBP10.95□□□□□ -0.66
SCN1A-222ENST00000642141 EP300Q09472 2414 aaPredicted RBP10.95□□□□□ -0.66
SCN1A-222ENST00000642141 NUP210Q8TEM1 1887 aaPredicted RBP10.94□□□□□ -0.66
SCN1A-222ENST00000642141 FAM186AA6NE01 2351 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 A0A1W2PQ27 194 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 A0A1W2PQ64 194 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 A0A1W2PQD8 194 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 ZNF840PA6NDX5 716 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 ANTXRLA6NF34 631 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 K7ESF4 209 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 LEFTY2O00292 366 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 HRO43593 1189 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 LILRB5O75023 590 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 AKAP3O75969 853 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 RHOBTB3O94955 611 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 STAU1O95793 577 aaKnown RBP10.94□□□□□ -0.66
SCN1A-222ENST00000642141 HLA-DRAP01903 254 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 GJA4P35212 333 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 VAMP7P51809 220 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 NDST1P52848 882 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 NRLP54845 237 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 PNOCQ13519 176 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 ZNF268Q14587 947 aaPredicted RBP10.94□□□□□ -0.66
SCN1A-222ENST00000642141 PDGFRLQ15198 375 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 ZACNQ401N2 412 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 TMEM196Q5HYL7 178 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 C1orf228Q6PIY5 440 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 PAQR9Q6ZVX9 377 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 CPA6Q8N4T0 437 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 C12orf29Q8N999 325 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 OSCP1Q8WVF1 389 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 JAKMIP2Q96AA8 810 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 RMDN1Q96DB5 314 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 MSANTD3Q96H12 275 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 C8orf48Q96LL4 319 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 P2RY13Q9BPV8 354 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 ELOVL4Q9GZR5 314 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 EPC1Q9H2F5 836 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 KIF9Q9HAQ2 790 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 KRT82Q9NSB4 513 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 FAM49BQ9NUQ9 324 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 SPTBN4Q9H254 2564 aa10.94□□□□□ -0.66
SCN1A-222ENST00000642141 DCHS1Q96JQ0 3298 aa10.93□□□□□ -0.66
SCN1A-222ENST00000642141 FAM237AA0A1B0GTK4 181 aa10.93□□□□□ -0.66
SCN1A-222ENST00000642141 TRDMT1O14717 391 aaKnown RBP10.93□□□□□ -0.66
SCN1A-222ENST00000642141 RNF40O75150 1001 aa10.93□□□□□ -0.66
SCN1A-222ENST00000642141 AP1G2O75843 785 aa10.93□□□□□ -0.66
SCN1A-222ENST00000642141 BEST1O76090 585 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms