RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 PKMP14618 531 aaKnown RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 PHKG2P15735 406 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 KCNJ4P48050 445 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 COMPP49747 757 aaPredicted RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 TPTEP56180 551 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 IL2P60568 153 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 SP2Q02086 613 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 DSC2Q02487 901 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 POU3F1Q03052 451 aaPredicted RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 PABPC4Q13310 644 aaKnown RBP eCLIP0.78□□□□□ -2.28
VPS35-212ENST00000640313 STIM1Q13586 685 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 PCBP1Q15365 356 aaKnown RBP eCLIP0.78□□□□□ -2.28
VPS35-212ENST00000640313 SEC23BQ15437 767 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 NAALADL2Q58DX5 795 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 L1TD1Q5T7N2 865 aaKnown RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 ZNF449Q6P9G9 518 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 SLC39A5Q6ZMH5 540 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP0.78□□□□□ -2.28
VPS35-212ENST00000640313 CLEC18CQ8NCF0 446 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 OR2W6PQ8NHA6 318 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 CTCFLQ8NI51 663 aaPredicted RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 PHF21BQ96EK2 531 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 DOCK7Q96N67 2140 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 C8orf37Q96NL8 207 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 PUS7Q96PZ0 661 aaKnown RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 FEZ1Q99689 392 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 C7orf25Q9BPX7 421 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 SIK2Q9H0K1 926 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 C6orf106Q9H6K1 298 aaPredicted RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 XPO5Q9HAV4 1204 aaKnown RBP eCLIP0.78□□□□□ -2.28
VPS35-212ENST00000640313 GLOD4Q9HC38 313 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 GPR35Q9HC97 309 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 DECR2Q9NUI1 292 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 RLIMQ9NVW2 624 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 MAFFQ9ULX9 164 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 SSX2IPQ9Y2D8 614 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 IGKV3D-20A0A0C4DH25 116 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 BTBD18B2RXH4 712 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 PPP1R12AO14974 1030 aaPredicted RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 SGTAO43765 313 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 KRT36O76013 467 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 NDUFB8O95169 186 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 FGAP02671 866 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 KRT5P13647 590 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 PPIFP30405 207 aaKnown RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 CYP2C19P33261 490 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 SLC5A3P53794 718 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 P2RX3P56373 397 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 SESN3P58005 492 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 CDC42EP1Q00587 391 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 TARDBPQ13148 414 aaKnown RBP eCLIP0.77□□□□□ -2.29
VPS35-212ENST00000640313 SLC4A8Q2Y0W8 1093 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 ATP13A4Q4VNC1 1196 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 FAM76BQ5HYJ3 339 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 EARS2Q5JPH6 523 aaKnown RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 SPSB3Q6PJ21 355 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 PRSS57Q6UWY2 283 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 TMEM108Q6UXF1 575 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 RANBP10Q6VN20 620 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 RFX8Q6ZV50 586 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 PPP1R32Q7Z5V6 425 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 SRGAP1Q7Z6B7 1085 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 LRRTM3Q86VH5 581 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 RHOT1Q8IXI2 618 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 AHI1Q8N157 1196 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 MUC20Q8N307 709 aaPredicted RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 BCAS4Q8TDM0 211 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 LMBR1Q8WVP7 490 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 XAGE5Q8WWM1 108 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 JPH3Q8WXH2 748 aaPredicted RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 SOCS4Q8WXH5 440 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 ATG4AQ8WYN0 398 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 GLG1Q92896 1179 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 R3HDM4Q96D70 268 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 TMX3Q96JJ7 454 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 INPP4AQ96PE3 977 aaPredicted RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 SPRY4Q9C004 299 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 QRSL1Q9H0R6 528 aaKnown RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 MRPS18AQ9NVS2 196 aaKnown RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 SIDT1Q9NXL6 827 aaKnown RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 CALCOCO1Q9P1Z2 691 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 CCNL1Q9UK58 526 aaPredicted RBP0.77□□□□□ -2.29
VPS35-212ENST00000640313 PCDHA12Q9UN75 941 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 PCDHGB1Q9Y5G3 927 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 PCDHGA2Q9Y5H1 932 aa0.77□□□□□ -2.29
VPS35-212ENST00000640313 CKAP5Q14008 2032 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 WDR81Q562E7 1941 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 IGKV6D-41A0A0C4DH26 115 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 TMEM272A0A1B0GTI8 110 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 DENND3A2RUS2 1198 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 PRSS29PA6NIE9 313 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 SRRM3A6NNA2 597 aaPredicted RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 GOLGA8AA7E2F4 631 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 SMTNL1A8MU46 457 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 AKAP10O43572 662 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 VPS4BO75351 444 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 KIF20AO95235 890 aa0.76□□□□□ -2.29
VPS35-212ENST00000640313 PAK4O96013 591 aaPredicted RBP0.76□□□□□ -2.29
VPS35-212ENST00000640313 CD63P08962 238 aa0.76□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms