RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 RPP25Q9BUL9 199 aaKnown RBP10.47□□□□□ -0.73
CLN3-261ENST00000637686 NT5C1AQ9BXI3 368 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 ELOVL4Q9GZR5 314 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 ATXN3LQ9H3M9 355 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 SMOC2Q9H3U7 446 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 IL21Q9HBE4 155 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 CISHQ9NSE2 258 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 FAM49BQ9NUQ9 324 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 GDE1Q9NZC3 331 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 IGSF9Q9P2J2 1179 aa10.47□□□□□ -0.73
CLN3-261ENST00000637686 MAGED2Q9UNF1 606 aaPredicted RBP10.47□□□□□ -0.73
CLN3-261ENST00000637686 NCOR1O75376 2440 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 ANHXE9PGG2 379 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 F8VP50 259 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 TRIM66O15016 1216 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 FGF19O95750 216 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 CSH1P0DML2 217 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 CSH2P0DML3 217 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 HMGA1P17096 107 aaKnown RBP10.46□□□□□ -0.73
CLN3-261ENST00000637686 TRIM21P19474 475 aaKnown RBP10.46□□□□□ -0.73
CLN3-261ENST00000637686 PON1P27169 355 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 ANXA13P27216 316 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 ZXDAP98168 799 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 HTR4Q13639 388 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 STXBP5Q5T5C0 1151 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 DPY19L2P1Q6NXN4 242 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 ENOSF1Q7L5Y1 443 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 TMC6Q7Z403 805 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 FAM35AQ86V20 835 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 DRC7Q8IY82 874 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 FUKQ8N0W3 1084 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 EHBP1Q8NDI1 1231 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 SYN2Q92777 582 aaPredicted RBP10.46□□□□□ -0.73
CLN3-261ENST00000637686 EDAQ92838 391 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 FGF14Q92915 247 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 JAKMIP2Q96AA8 810 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 SPATA17Q96L03 361 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 NT5C1BQ96P26 610 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 TMEM30AQ9NV96 361 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 GCNT4Q9P109 453 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 CAPN11Q9UMQ6 739 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 SORCS3Q9UPU3 1222 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 NUMBLQ9Y6R0 609 aa10.46□□□□□ -0.73
CLN3-261ENST00000637686 PTPRDP23468 1912 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 ATP8B3O60423 1300 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 AP1G2O75843 785 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 NOL4O94818 638 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 F11P03951 625 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 FECHP22830 423 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 TBXAS1P24557 533 aaPredicted RBP10.45□□□□□ -0.74
CLN3-261ENST00000637686 ADORA2BP29275 332 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 CDC25CP30307 473 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 RAD23BP54727 409 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 CYP4F8P98187 520 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 TDGQ13569 410 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 FAM78AQ5JUQ0 283 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 GPR158Q5T848 1215 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 KLHDC7AQ5VTJ3 777 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 TANGO2Q6ICL3 276 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 TRIM65Q6PJ69 517 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 MTSS1LQ765P7 747 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 RRAGAQ7L523 313 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 TMEM150AQ86TG1 271 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 GPIHBP1Q8IV16 184 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 ARHGEF19Q8IW93 802 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 PPM1KQ8N3J5 372 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 SLC44A3Q8N4M1 653 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 TTC39CQ8N584 583 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 ZNF397Q8NF99 534 aaPredicted RBP10.45□□□□□ -0.74
CLN3-261ENST00000637686 NEK11Q8NG66 645 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 ZSCAN18Q8TBC5 510 aaPredicted RBP10.45□□□□□ -0.74
CLN3-261ENST00000637686 SLC2A14Q8TDB8 520 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 KAT5Q92993 513 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 NXPE3Q969Y0 559 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 CYFIP2Q96F07 1278 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 SMARCD1Q96GM5 515 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 TMEM176AQ96HP8 235 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 C8orf48Q96LL4 319 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 MYRFLQ96LU7 910 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 HEXIM2Q96MH2 286 aaKnown RBP10.45□□□□□ -0.74
CLN3-261ENST00000637686 GCNAQ96QF7 691 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 PANX2Q96RD6 677 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 KCNK16Q96T55 309 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 CRACR2AQ9BSW2 395 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 DNAI2Q9GZS0 605 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 INTS2Q9H0H0 1204 aaKnown RBP10.45□□□□□ -0.74
CLN3-261ENST00000637686 SLITRK6Q9H5Y7 841 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 KRT82Q9NSB4 513 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 APEX2Q9UBZ4 518 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 BDP1A6H8Y1 2624 aa10.45□□□□□ -0.74
CLN3-261ENST00000637686 FAM86C2PA6NEL3 165 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 AKR1B15C9JRZ8 316 aaPredicted RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 NARSO43776 548 aaKnown RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 BEST1O76090 585 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 GYPCP04921 128 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 UCHL3P15374 230 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 HNRNPH3P31942 346 aaKnown RBP10.44□□□□□ -0.74
CLN3-261ENST00000637686 MAP3K7CLP57077 242 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 USP46P62068 366 aa10.44□□□□□ -0.74
CLN3-261ENST00000637686 YWHAEP62258 255 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms