RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 NBL1P41271 181 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 FKBP3Q00688 224 aaKnown RBP20.46■□□□□ 0.87
CLN3-260ENST00000637578 PLCB2Q00722 1185 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 LRRC63Q05C16 580 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 KLHL40Q2TBA0 621 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 CCDC183Q5T5S1 534 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 KRT39Q6A163 491 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 C1orf210Q8IVY1 113 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 MSANTD3Q96H12 275 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 EHD2Q9NZN4 543 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 GCNT4Q9P109 453 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 OBSL1O75147 1896 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 GREB1Q4ZG55 1949 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 SLC16A3O15427 465 aaKnown RBP20.46■□□□□ 0.87
CLN3-260ENST00000637578 EPB41P11171 864 aaKnown RBP20.46■□□□□ 0.87
CLN3-260ENST00000637578 INCA1Q0VD86 236 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 NFKBIBQ15653 356 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 CAVIN1Q6NZI2 390 aaKnown RBP20.46■□□□□ 0.87
CLN3-260ENST00000637578 RBM43Q6ZSC3 357 aaKnown RBP20.46■□□□□ 0.87
CLN3-260ENST00000637578 TRIML1Q8N9V2 468 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 FAXDC2Q96IV6 333 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 ZFYVE19Q96K21 471 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 SLC22A12Q96S37 553 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 TSG101Q99816 390 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 FAM83CQ9BQN1 747 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 CYP3A43Q9HB55 503 aa20.46■□□□□ 0.87
CLN3-260ENST00000637578 THG1LQ9NWX6 298 aaKnown RBP20.46■□□□□ 0.87
CLN3-260ENST00000637578 NCAM2O15394 837 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 PFKLP17858 780 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 CCNE1P24864 410 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 PPP3CCP48454 512 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 NDST1P52848 882 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 C1orf228Q6PIY5 440 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 ACOT1Q86TX2 421 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 MAML2Q8IZL2 1156 aaPredicted RBP20.45■□□□□ 0.86
CLN3-260ENST00000637578 FUKQ8N0W3 1084 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 RIN3Q8TB24 985 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 CSGALNACT1Q8TDX6 532 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 FAM3CQ92520 227 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 DHTKD1Q96HY7 919 aaPredicted RBP20.45■□□□□ 0.86
CLN3-260ENST00000637578 CYP2S1Q96SQ9 504 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 IMPG2Q9BZV3 1241 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 C8orf33Q9H7E9 229 aaPredicted RBP20.45■□□□□ 0.86
CLN3-260ENST00000637578 HMGXB4Q9UGU5 601 aa20.45■□□□□ 0.86
CLN3-260ENST00000637578 TRIM49BA6NDI0 452 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 STX10O60499 249 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 CD44P16070 742 aaKnown RBP20.44■□□□□ 0.86
CLN3-260ENST00000637578 PPP1R2P41236 205 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 FOXR2Q6PJQ5 311 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 FAM35AQ86V20 835 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 SEMA4DQ92854 862 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 NIF3L1Q9GZT8 377 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 GTSE1Q9NYZ3 720 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 IL37Q9NZH6 218 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 TICRRQ7Z2Z1 1910 aa20.44■□□□□ 0.86
CLN3-260ENST00000637578 ATP8B3O60423 1300 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 TRAV19A0A0A6YYK7 116 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 C2orf78A6NCI8 922 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 TNFRSF10BO14763 440 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 CLSTN1O94985 981 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 USP17L7P0C7H9 530 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 TCF3P15923 654 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 RALGPS2Q86X27 583 aaPredicted RBP20.43■□□□□ 0.86
CLN3-260ENST00000637578 FBXL13Q8NEE6 735 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 WHAMMQ8TF30 809 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 KCNK16Q96T55 309 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 CSNK1G1Q9HCP0 422 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 GKN1Q9NS71 199 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 COQ4Q9Y3A0 265 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 MIA3Q5JRA6 1907 aa20.43■□□□□ 0.86
CLN3-260ENST00000637578 KIF26AQ9ULI4 1882 aaPredicted RBP20.43■□□□□ 0.86
CLN3-260ENST00000637578 CACNA1IQ9P0X4 2223 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 ZNF840PA6NDX5 716 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 PPP1R3GB7ZBB8 358 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 PSMA7O14818 248 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 MXI1P50539 228 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 TNK2Q07912 1038 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 STIM1Q13586 685 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 MAMSTRQ6ZN01 415 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 NUP93Q8N1F7 819 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 ARL14EPQ8N8R7 260 aaPredicted RBP20.42■□□□□ 0.86
CLN3-260ENST00000637578 SMARCD1Q96GM5 515 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 MMRN2Q9H8L6 949 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 TRPC7Q9HCX4 862 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 RAB20Q9NX57 234 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 TRPM5Q9NZQ8 1165 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 ANAPC1Q9H1A4 1944 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 SPECC1L-ADORA2AF8WAN1 911 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 CILPO75339 1184 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 HDCP19113 662 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 CTHP32929 405 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 SOX9P48436 509 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 PDE6CP51160 858 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 KPNA1P52294 538 aaPredicted RBP20.42■□□□□ 0.86
CLN3-260ENST00000637578 ZNF77Q15935 545 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 ITPRIPL2Q3MIP1 535 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 KLHL10Q6JEL2 608 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 ZMIZ2Q8NF64 920 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 TWNKQ96RR1 684 aa20.42■□□□□ 0.86
CLN3-260ENST00000637578 DUSP9Q99956 384 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms