RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZDHHC17Q8IUH5 632 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 NPAS4Q8IUM7 802 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 KATNAL2Q8IYT4 538 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 ARFGAP1Q8N6T3 406 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 KHSRPQ92945 711 aaKnown RBP eCLIP17.74■□□□□ 0.43
CLN3-252ENST00000636907 ACBD6Q9BR61 282 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 NRDE2Q9H7Z3 1164 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 KRT82Q9NSB4 513 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 PCDHB8Q9UN66 801 aa17.74■□□□□ 0.43
CLN3-252ENST00000636907 ARHGEF37A1IGU5 675 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 C2CD4BA6NLJ0 364 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 HOXA2O43364 376 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 FAM200BP0CF97 657 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 GPD1P21695 349 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 FLT3P36888 993 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 ACADSBP45954 432 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 SLC8A3P57103 927 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 VSNL1P62760 191 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 SLC7A5Q01650 507 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 ATP13A4Q4VNC1 1196 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 INTS6LQ5JSJ4 861 aaKnown RBP17.73■□□□□ 0.43
CLN3-252ENST00000636907 OVOS1Q6IE37 1185 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 FAM35AQ86V20 835 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 OR10T2Q8NGX3 314 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 CLEC4CQ8WTT0 213 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 RXFP2Q8WXD0 754 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 VWCEQ96DN2 955 aa17.73■□□□□ 0.43
CLN3-252ENST00000636907 DDX47Q9H0S4 455 aaKnown RBP17.73■□□□□ 0.43
CLN3-252ENST00000636907 ARGLU1Q9NWB6 273 aaPredicted RBP17.73■□□□□ 0.43
CLN3-252ENST00000636907 DMGDHQ9UI17 866 aaKnown RBP17.73■□□□□ 0.43
CLN3-252ENST00000636907 TCRBV7S2A1N4TA0A589 114 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 LRCH4O75427 683 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 CAPN15O75808 1086 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 CTCFP49711 727 aaPredicted RBP17.72■□□□□ 0.43
CLN3-252ENST00000636907 ZNF143P52747 638 aaPredicted RBP17.72■□□□□ 0.43
CLN3-252ENST00000636907 MAP3K7CLP57077 242 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 LLGL1Q15334 1064 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 GLE1Q53GS7 698 aaKnown RBP17.72■□□□□ 0.43
CLN3-252ENST00000636907 LRRC38Q5VT99 294 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 TXNRD3NBQ6F5E7 133 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 WDR93Q6P2C0 686 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 FAM171BQ6P995 826 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 ZDHHC14Q8IZN3 488 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 MYLPFQ96A32 169 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 TMEM209Q96SK2 561 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 PLVAPQ9BX97 442 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 HCSTQ9UBK5 93 aa17.72■□□□□ 0.43
CLN3-252ENST00000636907 RAD51CO43502 376 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 ZMYND10O75800 440 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 AP1G2O75843 785 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 HSPA1AP0DMV8 641 aaKnown RBP17.71■□□□□ 0.43
CLN3-252ENST00000636907 HSPA1BP0DMV9 641 aaKnown RBP17.71■□□□□ 0.43
CLN3-252ENST00000636907 PDGFRAP16234 1089 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 SLC25A11Q02978 314 aaKnown RBP17.71■□□□□ 0.43
CLN3-252ENST00000636907 CNKSR3Q6P9H4 555 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.71■□□□□ 0.43
CLN3-252ENST00000636907 THEM5Q8N1Q8 247 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 EXD1Q8NHP7 514 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 KCTD13Q8WZ19 329 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 PKMYT1Q99640 499 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 SMOQ99835 787 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 HINFPQ9BQA5 517 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 KLHL11Q9NVR0 708 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 MICAL3Q7RTP6 2002 aa17.71■□□□□ 0.43
CLN3-252ENST00000636907 GOLGA6L10A0A0M3HER8 536 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 TBKBP1A7MCY6 615 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 NRP1O14786 923 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 SART1O43290 800 aaKnown RBP17.71■□□□□ 0.42
CLN3-252ENST00000636907 TADA2AO75478 443 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 ZRANB2O95218 330 aaKnown RBP eCLIP17.71■□□□□ 0.42
CLN3-252ENST00000636907 TUBBP07437 444 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 IL1R2P27930 398 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 RABGGTBP53611 331 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 CACNA2D1P54289 1103 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 YWHAHQ04917 246 aaPredicted RBP17.71■□□□□ 0.42
CLN3-252ENST00000636907 ADIGQ0VDE8 80 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 ACAP1Q15027 740 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 BRD3Q15059 726 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 SIX1Q15475 284 aaPredicted RBP17.71■□□□□ 0.42
CLN3-252ENST00000636907 CCDC50Q8IVM0 306 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 PRELID2Q8N945 189 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 HERPUD2Q9BSE4 406 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 CNPY3Q9BT09 278 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 RHOBTB2Q9BYZ6 727 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 PLEKHA4Q9H4M7 779 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 TMEM30AQ9NV96 361 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 TMLHEQ9NVH6 421 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 ASNSD1Q9NWL6 643 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 STIM2Q9P246 746 aa17.71■□□□□ 0.42
CLN3-252ENST00000636907 CCDC151A5D8V7 595 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 DPYSL4O14531 572 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 FSCN2O14926 492 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 KRT1P04264 644 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 ITGB8P26012 769 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 RFC2P35250 354 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 SCNN1AP37088 669 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 BCAR1P56945 870 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 ADCY1Q08828 1119 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 IKBKEQ14164 716 aa17.7■□□□□ 0.42
CLN3-252ENST00000636907 C15orf59Q2T9L4 293 aaPredicted RBP17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms