RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 TBXAS1P24557 533 aaPredicted RBP11.49□□□□□ -0.57
CLN3-244ENST00000636147 SOX11P35716 441 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 PHEXP78562 749 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 CYP24A1Q07973 514 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 MAMLD1Q13495 774 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 ABRAQ8N0Z2 381 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 MCPH1Q8NEM0 835 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 CMTM5Q96DZ9 223 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 MRPL1Q9BYD6 325 aaKnown RBP11.49□□□□□ -0.57
CLN3-244ENST00000636147 ABLIM1O14639 778 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 ALOX15BO15296 676 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 TBC1D12O60347 775 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 ALADP13716 330 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 YWHAEP62258 255 aaKnown RBP11.49□□□□□ -0.57
CLN3-244ENST00000636147 FLOT2Q14254 428 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 WDR72Q3MJ13 1102 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 MCUQ8NE86 351 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 ZNF606Q8WXB4 792 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 RIT2Q99578 217 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 ZNF395Q9H8N7 513 aaPredicted RBP11.49□□□□□ -0.57
CLN3-244ENST00000636147 NOCTQ9UK39 431 aaKnown RBP11.49□□□□□ -0.57
CLN3-244ENST00000636147 A6NHS1 94 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 M0QYV0 167 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 DCXO43602 365 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 CSDE1O75534 798 aaKnown RBP11.49□□□□□ -0.57
CLN3-244ENST00000636147 PSMD10O75832 226 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 ABHD2P08910 425 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 TPP2P29144 1249 aaPredicted RBP11.49□□□□□ -0.57
CLN3-244ENST00000636147 CLK2P49760 499 aaKnown RBP11.49□□□□□ -0.57
CLN3-244ENST00000636147 KCNK16Q96T55 309 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLN3-244ENST00000636147 GPATCH2LQ9NWQ4 482 aa11.49□□□□□ -0.57
CLN3-244ENST00000636147 POLRMTO00411 1230 aaKnown RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 PRPF4O43172 522 aaKnown RBP eCLIP11.48□□□□□ -0.57
CLN3-244ENST00000636147 VAV1P15498 845 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 RPL22P35268 128 aaKnown RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 RGS7P49802 495 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 NRLP54845 237 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 GAD2Q05329 585 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 KCTD21Q4G0X4 260 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 ANKRD22Q5VYY1 191 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 KATNAL2Q8IYT4 538 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 USP13Q92995 863 aaPredicted RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 AGAP3Q96P47 875 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 XAB2Q9HCS7 855 aaKnown RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 PRKAG3Q9UGI9 489 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 TLK1Q9UKI8 766 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 PCDHA10Q9Y5I2 948 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 KLHL33A6NCF5 533 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 GIPC1O14908 333 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 PDGFRAP16234 1089 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 PMLP29590 882 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 USP46P62068 366 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 OCRLQ01968 901 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 TBL3Q12788 808 aaKnown RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 PRKG1Q13976 671 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 SLC5A9Q2M3M2 681 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 CNPY1Q3B7I2 92 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 ZNF667Q5HYK9 610 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 CIAPIN1Q6FI81 312 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 CGB2Q6NT52 195 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 PPP1R2P3Q6NXS1 205 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 ZNF677Q86XU0 584 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 PRR11Q96HE9 360 aaPredicted RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 PHACTR1Q9C0D0 580 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 AVENQ9NQS1 362 aaPredicted RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 MYH3P11055 1940 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 SLC12A2P55011 1212 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 PDK3Q15120 406 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 OASLQ15646 514 aaKnown RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 SLC44A4Q53GD3 710 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 RBM44Q6ZP01 1051 aaKnown RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 ZBTB46Q86UZ6 589 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 ALLCQ8N6M5 410 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 PDZD8Q8NEN9 1154 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 PGBD4Q96DM1 585 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 THAP11Q96EK4 314 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 NLRP4Q96MN2 994 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 SLITRK1Q96PX8 696 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 HERPUD2Q9BSE4 406 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 EBF3Q9H4W6 596 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 DHX35Q9H5Z1 703 aaKnown RBP11.48□□□□□ -0.57
CLN3-244ENST00000636147 CYP26B1Q9NR63 512 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 ASNSD1Q9NWL6 643 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 STRIP2Q9ULQ0 834 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 COMMD10Q9Y6G5 202 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 AK5Q9Y6K8 562 aa11.48□□□□□ -0.57
CLN3-244ENST00000636147 H0YIN7 160 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 SNHG28P0DPA3 235 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 NELFEP18615 380 aaKnown RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 JAK3P52333 1124 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 IGBP1P78318 339 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 MRPS22P82650 360 aaKnown RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 PEX6Q13608 980 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 C16orf87Q6PH81 154 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 LAYNQ6UX15 382 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 ZNF354CQ86Y25 554 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 C12orf50Q8NA57 414 aaPredicted RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 ZBTB45Q96K62 511 aaPredicted RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 ACSS3Q9H6R3 686 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms