RNA–Protein interactions for RNA: ENST00000618207.4

CIITA-212, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5 BASIC

Gene CIITA, Length 2,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-212ENST00000618207 CLEC4CQ8WTT0 213 aa13.03□□□□□ -0.32
CIITA-212ENST00000618207 KCNK9Q9NPC2 374 aa13.03□□□□□ -0.32
CIITA-212ENST00000618207 PECAM1P16284 738 aaPredicted RBP13.02□□□□□ -0.33
CIITA-212ENST00000618207 LMO2P25791 158 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 MAP2K5Q13163 448 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 ANKMY2Q8IV38 441 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 MAGEB5Q9BZ81 275 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 ADAM7Q9H2U9 754 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 CYP3A43Q9HB55 503 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 SLC5A4Q9NY91 659 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 SLC45A1Q9Y2W3 748 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 HTTP42858 3142 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 SLC15A5A6NIM6 579 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 A6NJR5 290 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 POC1B-GALNT4F8VUJ3 575 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 F2P00734 622 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 HMGCRP04035 888 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 PFKMP08237 780 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 C6orf222P0C671 652 aaPredicted RBP13.02□□□□□ -0.33
CIITA-212ENST00000618207 DARSP14868 501 aaKnown RBP13.02□□□□□ -0.33
CIITA-212ENST00000618207 ATXN1P54253 815 aaKnown RBP13.02□□□□□ -0.33
CIITA-212ENST00000618207 VCPP55072 806 aaKnown RBP13.02□□□□□ -0.33
CIITA-212ENST00000618207 ZNF268Q14587 947 aaPredicted RBP13.02□□□□□ -0.33
CIITA-212ENST00000618207 C1orf228Q6PIY5 440 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 ARHGEF2Q92974 986 aaKnown RBP13.02□□□□□ -0.33
CIITA-212ENST00000618207 DDX56Q9NY93 547 aaKnown RBP13.02□□□□□ -0.33
CIITA-212ENST00000618207 GNEQ9Y223 722 aaKnown RBP13.02□□□□□ -0.33
CIITA-212ENST00000618207 FAM169AQ9Y6X4 670 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 NRCAMQ92823 1304 aa13.02□□□□□ -0.33
CIITA-212ENST00000618207 MYO18AQ92614 2054 aaKnown RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 GMNCA6NCL1 334 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 RRN3P2A6NIE6 340 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 C3orf70A6NLC5 250 aaPredicted RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 MEIS3P2A8K0S8 358 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 KRT7P08729 469 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 CTSHP09668 335 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 LCP1P13796 627 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 TFE3P19532 575 aaPredicted RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 ZC3H12AQ5D1E8 599 aaKnown RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 PPP6R3Q5H9R7 873 aaPredicted RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 SYDE1Q6ZW31 735 aaPredicted RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 TRMT10CQ7L0Y3 403 aaKnown RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 CYP4X1Q8N118 509 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 ALLCQ8N6M5 410 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 NDRG1Q92597 394 aaKnown RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 SNX27Q96L92 541 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 PRMT1Q99873 361 aaKnown RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 ATP2C2O75185 946 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 MAGEA4P43358 317 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 PSEN2P49810 448 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 RABGGTBP53611 331 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 SNX17Q15036 470 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 SOWAHAQ2M3V2 549 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 RNF187Q5TA31 235 aaPredicted RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 LRRC38Q5VT99 294 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 TWF2Q6IBS0 349 aaKnown RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 CPLX4Q7Z7G2 160 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 EXOC3L1Q86VI1 746 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 UNC45BQ8IWX7 931 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 ZBED8Q8IZ13 594 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 FAM71DQ8N9W8 422 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 BEST2Q8NFU1 509 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 RSAD2Q8WXG1 361 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 MCRS1Q96EZ8 462 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 PGM2Q96G03 612 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 ZFP42Q96MM3 310 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 VPS37BQ9H9H4 285 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 INTS9Q9NV88 658 aaKnown RBP13.01□□□□□ -0.33
CIITA-212ENST00000618207 WDR35Q9P2L0 1181 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 HESX1Q9UBX0 185 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 HEY1Q9Y5J3 304 aa13.01□□□□□ -0.33
CIITA-212ENST00000618207 SYNJ2BP-COX16A0A087WUM0 186 aa13□□□□□ -0.33
CIITA-212ENST00000618207 MYADML2A6NDP7 307 aa13□□□□□ -0.33
CIITA-212ENST00000618207 SPTLC1O15269 473 aa13□□□□□ -0.33
CIITA-212ENST00000618207 ZNF865P0CJ78 1059 aaPredicted RBP13□□□□□ -0.33
CIITA-212ENST00000618207 GPD1P21695 349 aa13□□□□□ -0.33
CIITA-212ENST00000618207 ACAT1P24752 427 aaKnown RBP13□□□□□ -0.33
CIITA-212ENST00000618207 SOX4Q06945 474 aaPredicted RBP13□□□□□ -0.33
CIITA-212ENST00000618207 IFT88Q13099 833 aa13□□□□□ -0.33
CIITA-212ENST00000618207 OASLQ15646 514 aaKnown RBP13□□□□□ -0.33
CIITA-212ENST00000618207 DCAF4L1Q3SXM0 396 aa13□□□□□ -0.33
CIITA-212ENST00000618207 FAM47CQ5HY64 1035 aa13□□□□□ -0.33
CIITA-212ENST00000618207 HIBCHQ6NVY1 386 aaPredicted RBP13□□□□□ -0.33
CIITA-212ENST00000618207 SRRM1Q8IYB3 904 aaKnown RBP13□□□□□ -0.33
CIITA-212ENST00000618207 CCDC13Q8IYE1 715 aa13□□□□□ -0.33
CIITA-212ENST00000618207 NIPA2Q8N8Q9 360 aa13□□□□□ -0.33
CIITA-212ENST00000618207 MAK16Q9BXY0 300 aaKnown RBP13□□□□□ -0.33
CIITA-212ENST00000618207 AP5M1Q9H0R1 490 aa13□□□□□ -0.33
CIITA-212ENST00000618207 COX16Q9P0S2 106 aa13□□□□□ -0.33
CIITA-212ENST00000618207 SMIM28A0A1B0GU29 152 aa13□□□□□ -0.33
CIITA-212ENST00000618207 DNALI1O14645 258 aaPredicted RBP13□□□□□ -0.33
CIITA-212ENST00000618207 TRAPPC3O43617 180 aa13□□□□□ -0.33
CIITA-212ENST00000618207 TRUB2O95900 331 aaKnown RBP13□□□□□ -0.33
CIITA-212ENST00000618207 LIG3P49916 1009 aa13□□□□□ -0.33
CIITA-212ENST00000618207 BASP1P80723 227 aaKnown RBP13□□□□□ -0.33
CIITA-212ENST00000618207 INCA1Q0VD86 236 aa13□□□□□ -0.33
CIITA-212ENST00000618207 SPDYCQ5MJ68 293 aa13□□□□□ -0.33
CIITA-212ENST00000618207 ANKRD22Q5VYY1 191 aa13□□□□□ -0.33
CIITA-212ENST00000618207 C9orf57Q5W0N0 161 aa13□□□□□ -0.33
CIITA-212ENST00000618207 LCLAT1Q6UWP7 414 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms